Browse Element(s) Details


OsAffx.6764.1.S1_at

Description tigr:9638.m02177
TID=OsAffx.6764.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2569011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25640NANA10+12947923..12949291No apical meristem protein
LOC_Os10g25660Os.46558.1.S1_at11/1110+12952831..12954237F-box domain containing protein, expressed
LOC_Os10g25670OsAffx.30530.1.S1_at11/1110+12956446..12957159expressed protein
LOC_Os10g25674Os.25167.1.S1_a_at11/1110+12958228..12960795Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os10g25680Os.25167.2.S1_at9/1110+12962948..12972003F-box family protein, putative, expressed
LOC_Os10g25690OsAffx.6764.1.S1_at11/1110+12973972..12976326hypothetical protein
LOC_Os10g25690Os.51366.1.S1_at2/1110+12973972..12976326hypothetical protein
LOC_Os10g25690OsAffx.31141.1.A1_at1/1110+12973972..12976326hypothetical protein
LOC_Os10g25710Os.27691.2.S1_x_at3/1110+12985100..12986283retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25710Os.27691.1.S1_x_at2/1110+12985100..12986283retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25720NANA10+12987118..12990891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25730OsAffx.29207.2.S1_at10/1110+12995795..12996854hypothetical protein
LOC_Os10g25730OsAffx.29207.1.S1_x_at6/1110+12995795..12996854hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6764.1.S1_at--785--5711Chr10:12974588..12974612 (25 bp)
GACTCCATTTGTACCTATTTGCTGA
LOC_Os10g25690
OsAffx.6764.1.S1_at--416--3751Chr10:12974661..12974685 (25 bp)
CTCACATCAATGAGGTTTTCCATGT
LOC_Os10g25690
OsAffx.6764.1.S1_at--946--751Chr10:12974682..12974706 (25 bp)
ATGTAAATCATCGTGTCCCGTTGGC
LOC_Os10g25690
OsAffx.6764.1.S1_at--845--8071Chr10:12974719..12974743 (25 bp)
GGAGCTCTGCCAGAAGTCTGCCGGA
LOC_Os10g25690
OsAffx.6764.1.S1_at--129--1471Chr10:12974730..12974754 (25 bp)
AGAAGTCTGCCGGAGATCCGTCGGA
LOC_Os10g25690
OsAffx.6764.1.S1_at--726--1271Chr10:12974743..12974767 (25 bp)
AGATCCGTCGGACTCTCACTTGGAG
LOC_Os10g25690
OsAffx.6764.1.S1_at--499--491Chr10:12974785..12974809 (25 bp)
ATCGGCCCCTCATCAAGTAATCAAG
LOC_Os10g25690
OsAffx.6764.1.S1_at--771--5771Chr10:12975625..12975730 (25 bp)
GACGAGGCAGCTCAGATGGTCTTCT
LOC_Os10g25690
OsAffx.6764.1.S1_at--950--9631Chr10:12975718..12975741 (24 bp)
TCAGATGGTCTTCTATATCTTCACA
LOC_Os10g25690
OsAffx.6764.1.S1_at--663--9691Chr10:12975737..12975761 (25 bp)
TCACAATTGTTGTGCCCTTGTCTCT
LOC_Os10g25690
OsAffx.6764.1.S1_at--1133--3611Chr10:12975753..12975777 (25 bp)
CTTGTCTCTTCTCAATCCACATCAG
LOC_Os10g25690
Target Sequence 
GACTCCATTTGTACCTATTTGCTGATTATAGTGGAAGTTTGGAGTGGACCGTTAGTCCCATGGTTTTTTACTCCTCACAT
CAATGAGGTTTTCCATGTAAATCATCGTGTCCCGTTGGCCGCATCCTCGCCGGAGCTCTGCCAGAAGTCTGCCGGAGATC
CGTCGGACTCTCACTTGGAGCCGCCACCGGAGCAGGCATCGGCCCCTCATCAAGTAATCAAGGATTTCCGAGGTGGAGAG
CAGGACGAGGCAGCTCAGATGGTCTTCTATATCTTCACAATTGTTGTGCCCTTGTCTCTTCTCAATCCACATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis