Browse Element(s) Details


Os.46558.1.S1_at

Description gb:AK064116.1
DB_XREF= gi:32974134
TID=Os.46558.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46558 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNAa0011L09.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A11, full insert sequence.
FL= gb:AK064116.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2566011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25570Os.46685.1.S1_x_at11/1110+12926844..12927884expressed protein
LOC_Os10g25570Os.52427.1.S1_at8/1110+12926844..12927884expressed protein
LOC_Os10g25580OsAffx.20379.1.S1_at11/1110+12929937..12930182hypothetical protein
LOC_Os10g25590Os.46684.1.S1_at5/1110+12932478..12934134Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g25600Os.40386.1.S1_at11/1110+12934316..12938057expressed protein
LOC_Os10g25600Os.17912.1.A1_at5/1110+12934316..12938057expressed protein
LOC_Os10g25600OsAffx.23357.2.S1_s_at2/1110+12934316..12938057expressed protein
LOC_Os10g25600OsAffx.23357.2.S1_at1/1110+12934316..12938057expressed protein
LOC_Os10g25620OsAffx.20377.1.S1_at11/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25620OsAffx.20377.1.S1_x_at11/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25620Os.17912.2.S1_x_at2/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25630OsAffx.18408.1.S1_at4/1110+12946408..12947550expressed protein
LOC_Os10g25630OsAffx.20377.1.S1_x_at1/1110+12946408..12947550expressed protein
LOC_Os10g25640NANA10+12947923..12949291No apical meristem protein
LOC_Os10g25660Os.46558.1.S1_at11/1110+12952831..12954237F-box domain containing protein, expressed
LOC_Os10g25670OsAffx.30530.1.S1_at11/1110+12956446..12957159expressed protein
LOC_Os10g25674Os.25167.1.S1_a_at11/1110+12958228..12960795Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os10g25680Os.25167.2.S1_at9/1110+12962948..12972003F-box family protein, putative, expressed
LOC_Os10g25690OsAffx.6764.1.S1_at11/1110+12973972..12976326hypothetical protein
LOC_Os10g25690Os.51366.1.S1_at2/1110+12973972..12976326hypothetical protein
LOC_Os10g25690OsAffx.31141.1.A1_at1/1110+12973972..12976326hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46558.1.S1_at--1149--5331Chr10:12953375..12953399 (25 bp)
GAAGTTCAGATCAATAGCCGCGCCG
LOC_Os10g25660
Os.46558.1.S1_at--830--4511Chr10:12953354..12953378 (25 bp)
GCCGCAATGCGCGATTACTTGGGTA
LOC_Os10g25660
Os.46558.1.S1_at--718--2791Chr10:12953330..12953354 (25 bp)
AAGAGGACTCTCTGTGTTGTCCGGC
LOC_Os10g25660
Os.46558.1.S1_at--727--6631Chr10:12953315..12953339 (25 bp)
GTTGTCCGGCAGACTGTGCAGCATT
LOC_Os10g25660
Os.46558.1.S1_at--1040--5931Chr10:12953239..12953263 (25 bp)
GAGCACCGGAGTTGGCATTGCATTA
LOC_Os10g25660
Os.46558.1.S1_at--413--4771Chr10:12953200..12953224 (25 bp)
GCTGCTTCTGCCGAGCGAATAAATT
LOC_Os10g25660
Os.46558.1.S1_at--816--5071Chr10:12953063..12953087 (25 bp)
GCAGCCCTGCTCTGTTTATGAATTG
LOC_Os10g25660
Os.46558.1.S1_at--645--9131Chr10:12953040..12953064 (25 bp)
TGCGGCGCAATGAGGCTGTCTACAA
LOC_Os10g25660
Os.46558.1.S1_at--1070--4931Chr10:12952947..12952971 (25 bp)
GCATTGTGCCATACCAGATGAGCTT
LOC_Os10g25660
Os.46558.1.S1_at--348--1911Chr10:12952892..12952916 (25 bp)
ACGTGGTGCCTTGCAGTTTTCTGAA
LOC_Os10g25660
Os.46558.1.S1_at--93--751Chr10:12952860..12952884 (25 bp)
ATGTTTACCATCTTCCTCTTTGAGT
LOC_Os10g25660
Target Sequence 
GAAGTTCAGATCAATAGCCGCGCCGCAATGCGCGATTACTTGGGTAAGAGGACTCTCTGTGTTGTCCGGCAGACTGTGCA
GCATTGTCATCCCCGAGTCCATGACCGCGGAGATCTGGGTTCTTGAGGACTATCATGAGCACCGGAGTTGGCATTGCATT
AGGGAAATTGACATGGCTGCTTCTGCCGAGCGAATAAATTTAGAGAATTTTTGGGATTCAGACTTGAGGATGTTCCTCAA
GGTGGACGTGGAGCAGGGTATTGAGCATGAGGTTCAAGAGATCATAATTCACCATGGGAACAAGATCATCTCGCAGCCCT
GCTCTGTTTATGAATTGCGGCGCAATGAGGCTGTCTACAATGTTAGGCACAACGTCTGGCNCAAGAGTACGATGTGCTTT
AATGAAGAGTCCATCATGTACAAGGAGAGCATTGTGCCATACCAGATGAGCTTTGGCATGAAGTCACAGTTTTGTGAAAG
GAAACGTGGTGCCTTGCAGTTTTCTGAAGGGCAACATGTTTACCATCTTCCTCTTTGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis