Browse Element(s) Details


Os.46684.1.S1_at

Description gb:CB660512
DB_XREF= gi:29664237
DB_XREF=OSJNEd02F23.f
CLONE=OSJNEd02F23
TID=Os.46684.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46684 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Bronze-2 protein (OSJNBa0011L09.7), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g255905/11Glutathione S-transferase, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25570Os.46685.1.S1_x_at11/1110+12926844..12927884expressed protein
LOC_Os10g25570Os.52427.1.S1_at8/1110+12926844..12927884expressed protein
LOC_Os10g25580OsAffx.20379.1.S1_at11/1110+12929937..12930182hypothetical protein
LOC_Os10g25590Os.46684.1.S1_at5/1110+12932478..12934134Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g25600Os.40386.1.S1_at11/1110+12934316..12938057expressed protein
LOC_Os10g25600Os.17912.1.A1_at5/1110+12934316..12938057expressed protein
LOC_Os10g25600OsAffx.23357.2.S1_s_at2/1110+12934316..12938057expressed protein
LOC_Os10g25600OsAffx.23357.2.S1_at1/1110+12934316..12938057expressed protein
LOC_Os10g25620OsAffx.20377.1.S1_at11/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25620OsAffx.20377.1.S1_x_at11/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25620Os.17912.2.S1_x_at2/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25630OsAffx.18408.1.S1_at4/1110+12946408..12947550expressed protein
LOC_Os10g25630OsAffx.20377.1.S1_x_at1/1110+12946408..12947550expressed protein
LOC_Os10g25640NANA10+12947923..12949291No apical meristem protein
LOC_Os10g25660Os.46558.1.S1_at11/1110+12952831..12954237F-box domain containing protein, expressed
LOC_Os10g25670OsAffx.30530.1.S1_at11/1110+12956446..12957159expressed protein
LOC_Os10g25674Os.25167.1.S1_a_at11/1110+12958228..12960795Mps one binder kinase activator-like 1A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46684.1.S1_at--518--291NONE
ATAGATGACAAGTTCTGGCCAGCGT
NONE
Os.46684.1.S1_at--339--2831Chr10:12932843..12932866 (24 bp)
AAGTTCTGGCCAGCGTTGGACGCCA
LOC_Os10g25590
Os.46684.1.S1_at--545--9471Chr10:12932638..12932662 (25 bp)
TCTGGGCCTGCGAGAACCTCAACGG
LOC_Os10g25590
Os.46684.1.S1_at--335--1051Chr10:12932512..12932536 (25 bp)
AGGTGGTCGCGTTCACGAGGTTCCT
LOC_Os10g25590
Os.46684.1.S1_at--141--9611Chr10:12932500..12932524 (25 bp)
TCACGAGGTTCCTCCAAACCAAGTT
LOC_Os10g25590
Os.46684.1.S1_at--382--4371Chr10:12932482..12932506 (25 bp)
CCAAGTTTGGCGTCGCAGGATCGAA
LOC_Os10g25590
Os.46684.1.S1_at--1036--3111Chr10:12932426..12932450 (25 bp)
AATTTTTGTTGCTGTATTTGTATCG
NONE
Os.46684.1.S1_at--215--8771Chr10:12932408..12932432 (25 bp)
TGTATCGTCCCAAAGTTCGATCGCT
NONE
Os.46684.1.S1_at--897--7351Chr10:12932340..12932364 (25 bp)
GTGAACATGCATGCAAGGTTGGGTT
NONE
Os.46684.1.S1_at--729--3191Chr10:12932327..12932351 (25 bp)
CAAGGTTGGGTTTGGCATAAACTCA
NONE
Os.46684.1.S1_at--129--8291Chr10:12932314..12932338 (25 bp)
GGCATAAACTCAAACCATGATGGAA
NONE
Target Sequence 
ATAGATGACAAGTTCTGGCCAGCGTTGGACGCCATCTCACTGGCGCCAACGCCGGAAGCGCGGGCCACCGCGACGGCGAG
CACCCGCGCGGCCCTGAAGCTCCTGGAGGAGGCCTTCGCCGCCCGCAGCAACGGCGGGGCCTTCTTCTCCGGCGGCGGCG
CCGCCGCCTCGCCGGGCCTCCTCGACGTCGCGCTCGGCTGCTTCCTGCCGGCGCTCTGGGCCTGCGAGAACCTCAACGGG
CTCCGCCTCCTGGACGACGACGCGACGCCGCTCCTCCGCGCGTGGAGCGCGCGGCTCGCCGCCACCCCCGCCGCCATGGC
CGTCATGCCGGAGACGGAGGAGGTGGTCGCGTTCACGAGGTTCCTCCAAACCAAGTTTGGCGTCGCAGGATCGAAATAAT
TAAGACAATATTATGTAATTTAAGTTAATTTTTGTTGCTGTATTTGTATCGTCCCAAAGTTCGATCGCTCCGGGGTTTAT
GGTTTAGTTTATTCCTTCCTTTGTTTTTATTGGTGAACATGCATGCAAGGTTGGGTTTGGCATAAACTCAAACCATGATG
GAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis