Browse Element(s) Details


Os.17912.1.A1_at

Description gb:AK106772.1
DB_XREF= gi:32991981
TID=Os.17912.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17912 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1088D01.10 (B1088D01.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-G01, full insert sequence.
FL= gb:AK106772.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g256005/11expressed protein
LOC_Os10g262603/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25570Os.46685.1.S1_x_at11/1110+12926844..12927884expressed protein
LOC_Os10g25570Os.52427.1.S1_at8/1110+12926844..12927884expressed protein
LOC_Os10g25580OsAffx.20379.1.S1_at11/1110+12929937..12930182hypothetical protein
LOC_Os10g25590Os.46684.1.S1_at5/1110+12932478..12934134Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g25600Os.40386.1.S1_at11/1110+12934316..12938057expressed protein
LOC_Os10g25600Os.17912.1.A1_at5/1110+12934316..12938057expressed protein
LOC_Os10g25600OsAffx.23357.2.S1_s_at2/1110+12934316..12938057expressed protein
LOC_Os10g25600OsAffx.23357.2.S1_at1/1110+12934316..12938057expressed protein
LOC_Os10g25620OsAffx.20377.1.S1_at11/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25620OsAffx.20377.1.S1_x_at11/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25620Os.17912.2.S1_x_at2/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25630OsAffx.18408.1.S1_at4/1110+12946408..12947550expressed protein
LOC_Os10g25630OsAffx.20377.1.S1_x_at1/1110+12946408..12947550expressed protein
LOC_Os10g25640NANA10+12947923..12949291No apical meristem protein
LOC_Os10g25660Os.46558.1.S1_at11/1110+12952831..12954237F-box domain containing protein, expressed
LOC_Os10g25670OsAffx.30530.1.S1_at11/1110+12956446..12957159expressed protein
LOC_Os10g25674Os.25167.1.S1_a_at11/1110+12958228..12960795Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os10g25680Os.25167.2.S1_at9/1110+12962948..12972003F-box family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17912.1.A1_at--536--6772Chr10:12937313..12937337 (25 bp)
GTTACATAATTTGTCCAGCTCTGAT
LOC_Os10g25600
Os.17912.1.A1_at--1134--8733Chr10:12937339..12937560 (25 bp)
TGTAAACTGTCCTTTGGCACCTGTA
LOC_Os10g25600
Os.17912.1.A1_at--1044--2172Chr10:12937366..12937388 (23 bp)
ACACTCCATTTTCTTACAGACACGG
LOC_Os10g25600
Os.17912.1.A1_at--859--8951Chr01:13330448..13330472 (25 bp)
TGAACTTCCCTTCATATGACTGTAA
NONE
Os.17912.1.A1_at--992--9732Chr10:12937505..12937528 (24 bp)
TAATTCTCCGTGTTTTTCTCCTGAA
LOC_Os10g25600
Os.17912.1.A1_at--319--3391Chr01:13330506..13330530 (25 bp)
CAGCGAGCATGGTCGACTGTACTGT
NONE
Os.17912.1.A1_at--36--9431Chr01:13330536..13330560 (25 bp)
TCAGTGTTTCTGAGGTTAGACCCCA
NONE
Os.17912.1.A1_at--254--7891Chr01:13330549..13330573 (25 bp)
GGTTAGACCCCATTATTTTGCATTG
NONE
Os.17912.1.A1_at--54--1211Chr01:13330582..13330606 (25 bp)
AGTATTCTCGTGCATGTATCTCAAA
NONE
Os.17912.1.A1_at--755--2453Chr10:12937648..12937672 (25 bp)
AACAATTTTGTTACTTCTGCAGGCA
LOC_Os10g25600
Os.17912.1.A1_at--556--1472Chr01:13330764..13330788 (25 bp)
AGCAATTAACACTCTCTTACCAATC
NONE
Target Sequence 
GTTACATAATTTGTCCAGCTCTGATTTGTAAACTGTCCTTTGGCACCTGTACCACACTCCATTTTCTTACAGACACGGTC
ATTGATGATATCTCTTGGTCTGAAGGATCATTCCCAGGTATTATTTGAACTTCCCTTCATATGACTGTAATTCTCCGTGT
TTTTCTCCTGAATCTTGCCAAATCAGCGAGCATGGTCGACTGTACTGTGCATATCAGTGTTTCTGAGGTTAGACCCCATT
ATTTTGCATTGGAATCAATAGTATTCTCGTGCATGTATCTCAAACAATTTTGTTACTTCTGCAGGCAACAATGAAATATA
TTGTTTCCACCATAATTGAGAACCGCCTATAGTAATAGTTTTGCATATCGAGCTGGGGTTGGAATGGCTGGGCACATATC
TATTCACTTCATCAACAGAGATGTTGACATGATTAGTGCTGAGCAATTAACACTCTCTTACCAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17912.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis