Browse Element(s) Details


OsAffx.29207.2.S1_at

Description tigr:9632.m03887
TID=OsAffx.29207.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4089011/11hypothetical protein
LOC_Os08g1487011/11hypothetical protein
LOC_Os10g2573010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40860Os.12079.1.S1_at11/114+24024851..24028652transposon protein, putative, unclassified, expressed
LOC_Os04g40870Os.35089.1.S1_at11/114+24034237..24038366expressed protein
LOC_Os04g40880Os.373.1.S1_s_at11/114+24048790..24051074Nucleotide-binding protein 1, putative, expressed
LOC_Os04g40880Os.56121.1.S1_x_at11/114+24048790..24051074Nucleotide-binding protein 1, putative, expressed
LOC_Os04g40890OsAffx.29207.2.S1_at11/114+24053443..24053817hypothetical protein
LOC_Os04g40890OsAffx.29207.1.S1_x_at3/114+24053443..24053817hypothetical protein
LOC_Os04g40900Os.27605.1.S1_at5/114+24057495..24059304expressed protein
LOC_Os04g40910Os.22667.1.S1_at11/114+24060506..24064172F-box domain containing protein, expressed
LOC_Os04g40910Os.52534.1.S1_x_at5/114+24060506..24064172F-box domain containing protein, expressed
LOC_Os04g40910OsAffx.16986.1.S1_at4/114+24060506..24064172F-box domain containing protein, expressed
LOC_Os04g40920Os.51645.1.S1_at11/114+24074963..24076626expressed protein
LOC_Os04g40930Os.18963.1.S1_a_at11/114+24077363..24082114DNA binding protein GT-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29207.2.S1_at--676--4773Chr08:8957573..8957642 (25 bp)
GCTCCTTTGCAGGTCATTGCCGAAA
LOC_Os08g14870
OsAffx.29207.2.S1_at--786--7813Chr08:8957629..8957653 (25 bp)
GGTCATTGCCGAAATACGTGTCTCT
LOC_Os08g14870
OsAffx.29207.2.S1_at--534--10693Chr08:8957634..8957658 (25 bp)
TTGCCGAAATACGTGTCTCTTACCT
LOC_Os08g14870
OsAffx.29207.2.S1_at--318--5593Chr08:8957639..8957663 (25 bp)
GAAATACGTGTCTCTTACCTTGAGA
LOC_Os08g14870
OsAffx.29207.2.S1_at--940--4313Chr08:8957656..8957680 (25 bp)
CCTTGAGAGTTTTGGCGACGAGTTG
LOC_Os08g14870
OsAffx.29207.2.S1_at--25--10873Chr08:8957667..8957691 (25 bp)
TTGGCGACGAGTTGTATATTTGTAC
LOC_Os08g14870
OsAffx.29207.2.S1_at--177--3953Chr08:8957671..8957695 (25 bp)
CGACGAGTTGTATATTTGTACGAAA
LOC_Os08g14870
OsAffx.29207.2.S1_at--199--6512Chr08:8957708..8957732 (25 bp)
GATATAGACAGTGAGAACAACGGAC
LOC_Os08g14870
OsAffx.29207.2.S1_at--81--8913Chr08:8957719..8957743 (25 bp)
TGAGAACAACGGACTGAACACATTA
LOC_Os08g14870
OsAffx.29207.2.S1_at--169--933Chr08:8957728..8957752 (25 bp)
CGGACTGAACACATTATTTACCACT
LOC_Os08g14870
OsAffx.29207.2.S1_at--1133--5493Chr08:8957734..8957758 (25 bp)
GAACACATTATTTACCACTGCAGCT
LOC_Os08g14870
Target Sequence 
GCTCCTTTGCAGGTCATTGCCGAAATACGTGTCTCTTACCTTGAGAGTTTTGGCGACGAGTTGTATATTTGTACGAAATA
TTTCNGTCAGGATATAGACAGTGAGAACAACGGACTGAACACATTATTTACCACTGCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29207.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis