Browse Element(s) Details


OsAffx.16986.1.S1_at

Description tigr:9636.m01375
TID=OsAffx.16986.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g139009/11expressed protein
LOC_Os04g409104/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13860Os.48441.1.S1_at1/118+8269576..8273965retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g13860OsAffx.943.1.S1_at1/118+8269576..8273965retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g13870OsAffx.29181.1.S1_at11/118+8276619..8278991D-mannose binding lectin family protein
LOC_Os08g13880NANA8+8283927..8284870hypothetical protein
LOC_Os08g13890Os.27605.1.S1_at11/118+8290891..8293230Exonuclease, putative, expressed
LOC_Os08g13900OsAffx.16986.1.S1_at9/118+8294616..8295803expressed protein
LOC_Os08g13900Os.27718.1.A1_at1/118+8294616..8295803expressed protein
LOC_Os08g13910Os.56197.1.S1_at7/118+8301435..8305195hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16986.1.S1_at--485--2591NONE
AACGACGGTGGCATGTTTTTTCATA
NONE
OsAffx.16986.1.S1_at--793--5751NONE
GACGGTGGCATGTTTTTTCATAGTT
NONE
OsAffx.16986.1.S1_at--1062--8771Chr08:8294997..8295020 (24 bp)
TGTTTTTTCATAGTTGGAGCATCAC
LOC_Os08g13900
OsAffx.16986.1.S1_at--446--8531Chr08:8294983..8295007 (25 bp)
TGGAGCATCACTTAAGAAACCTTCT
LOC_Os08g13900
OsAffx.16986.1.S1_at--918--5552Chr08:8294968..8294992 (25 bp)
GAAACCTTCTGCCATCAGTTTTGTG
LOC_Os08g13900
OsAffx.16986.1.S1_at--830--2632Chr08:8294966..8294990 (25 bp)
AACCTTCTGCCATCAGTTTTGTGAA
LOC_Os08g13900
OsAffx.16986.1.S1_at--712--9491Chr08:8294961..8294985 (25 bp)
TCTGCCATCAGTTTTGTGAACACCT
LOC_Os08g13900
OsAffx.16986.1.S1_at--1151--4412Chr08:8294958..8294982 (25 bp)
GCCATCAGTTTTGTGAACACCTTTG
LOC_Os08g13900
OsAffx.16986.1.S1_at--191--3451Chr08:8294953..8294977 (25 bp)
CAGTTTTGTGAACACCTTTGATATT
LOC_Os08g13900
OsAffx.16986.1.S1_at--18--8691Chr08:8294947..8294971 (25 bp)
TGTGAACACCTTTGATATTTATATT
LOC_Os08g13900
OsAffx.16986.1.S1_at--192--10492Chr08:8294814..8294947 (25 bp)
TTACATGTTTCTGAGCATTTTGGGC
LOC_Os08g13900
Target Sequence 
AACGACGGTGGCATGTTTTTTCATAGTTGGAGCATCACTTAAGAAACCTTCTGCCATCAGTTTTGTGAACACCTTTGATA
TTTATATTTACATGTTTCTGAGCATTTTGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis