Browse Element(s) Details


Os.48441.1.S1_at

Description gb:AK067264.1
DB_XREF= gi:32977282
TID=Os.48441.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.48441 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096H10, full insert sequence.
FL= gb:AK059739.1 gb:AK067264.1 gb:AK104657.1 gb:AK104922.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1754011/11Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os08g1400010/11Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os08g138601/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17480OsAffx.18899.1.S1_at11/1111+9726250..9729878Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os11g17490Os.53540.2.S1_at1/1111+9730897..9731630hypothetical protein
LOC_Os11g17504Os.10419.1.S1_a_at11/1111+9732859..9737703Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os11g17504OsAffx.18901.1.S1_at11/1111+9732859..9737703Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os11g17520OsAffx.13097.1.S1_s_at11/1111+9739339..9743409hypothetical protein
LOC_Os11g17520Os.46613.1.S2_at2/1111+9739339..9743409hypothetical protein
LOC_Os11g17530Os.57138.1.S1_at11/1111+9745970..9750238pentatricopeptide, putative, expressed
LOC_Os11g17530Os.6596.1.S1_at11/1111+9745970..9750238pentatricopeptide, putative, expressed
LOC_Os11g17540Os.48441.1.S1_at11/1111+9751085..9754806Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os11g17550OsAffx.31019.1.S1_at11/1111+9755436..9756398hypothetical protein
LOC_Os11g17560OsAffx.31020.1.S1_at11/1111+9758124..9758684hypothetical protein
LOC_Os11g17570NANA11+9763048..9763401transposon protein, putative, unclassified
LOC_Os11g17580OsAffx.7134.1.S1_at11/1111+9765907..9766614hypothetical protein
LOC_Os11g17590NANA11+9768096..9768683hypothetical protein
LOC_Os11g17600Os.55735.1.S1_at11/1111+9772833..9785545expressed protein
LOC_Os11g17600Os.53370.1.S1_at10/1111+9772833..9785545expressed protein
LOC_Os11g17600Os.53046.1.S1_at1/1111+9772833..9785545expressed protein
LOC_Os11g17600OsAffx.14636.1.S1_at1/1111+9772833..9785545expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48441.1.S1_at--373--6772Chr11:9753843..9753867 (25 bp)
GTTAGCTGTCGAGGTTGCGAAAACC
LOC_Os11g17540
Os.48441.1.S1_at--561--8872Chr11:9753870..9753894 (25 bp)
TGAGGTTGGAGCGATTGTCATCTCC
LOC_Os11g17540
Os.48441.1.S1_at--51--9252Chr11:9754073..9754097 (25 bp)
TCCTTGGAGCTGAGAATGACGCTGT
LOC_Os11g17540
Os.48441.1.S1_at--363--1612Chr11:9754080..9754104 (25 bp)
AGCTGAGAATGACGCTGTAACACCA
LOC_Os11g17540
Os.48441.1.S1_at--167--3032Chr11:9754129..9754153 (25 bp)
AATGCCTTGCGCCAAAGACCTGAGG
LOC_Os11g17540
Os.48441.1.S1_at--696--3632Chr11:9754134..9754154 (21 bp)
CTTGCGCCAAAGACCTGAGGTTGAT
LOC_Os11g17540
Os.48441.1.S1_at--534--9553Chr11:9754472..9754496 (25 bp)
TCTTTCCAGGAGTGGCTCATGGCTT
LOC_Os11g17540
Os.48441.1.S1_at--183--8454Chr11:9754621..9754645 (25 bp)
GGCCAGTGCAATTGTTTATTTCCAT
LOC_Os11g17540
Os.48441.1.S1_at--655--72Chr11:9754654..9754678 (25 bp)
ATTGCTAGTGTCCATGTATATCCTG
LOC_Os11g17540
Os.48441.1.S1_at--1008--7453Chr11:9754661..9754685 (25 bp)
GTGTCCATGTATATCCTGGTGTTAA
LOC_Os11g17540
Os.48441.1.S1_at--1122--3253Chr11:9754774..9754798 (25 bp)
CAAAATGCAAACTCTTTTTGTTCCG
LOC_Os11g17540
Target Sequence 
GTTAGCTGTCGAGGTTGCGAAAACCAATGAGGTTGGAGCGATTGTCATCTCCCATCCTTCATCGGTGACTGCTGATGATA
TGAAAGATGTCAAATGCCCCATTGAAATCCTTGGAGCTGAGAATGACGCTGTAACACCACCAAGATTAGTGTACCAGTTT
GTNAATGCCTTGCGCCAAAGACCTGAGGTTGATTACTTTGCCAGGATCTTTCCAGGAGTGGCTCATGGCTTTGCTTGCAG
ATATAACGCCAGCAACCCGTTTGCTGTCAGAACTGCTGAACAATCTCTTGCCTTAATGCTTGACTGGTTTGAGAAACACT
TGAAATGACANTAGCTAATCATGCATGNAATGCAAGGCCAGTGCAATTGTTTATTTCCATCAAAATACATTGCTAGTGTC
CATGTATATCCTGGTGTTAAGTGAAACTTATATAAATAAGCACTAGTGTAAAGTGAAAGTATGTGTTGAATATGGTGCGA
AGTGAAACAAAGTGTACTTTATGAAGTGCAAAATGCAAACTCTTTTTGTTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48441.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis