Browse Element(s) Details


Os.53540.2.S1_at

Description gb:AK073192.1
DB_XREF= gi:32983215
TID=Os.53540.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53540 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033021P10, full insert sequence.
FL= gb:AK073192.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g174901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17440OsAffx.31018.4.S1_at10/1111+9697861..9705987enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os11g17440OsAffx.31018.3.S1_x_at7/1111+9697861..9705987enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os11g17440OsAffx.31018.2.S1_x_at1/1111+9697861..9705987enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os11g17450OsAffx.18898.1.S1_at11/1111+9707331..9707552hypothetical protein
LOC_Os11g17460NANA11+9711287..9712350retrotransposon protein, putative, unclassified
LOC_Os11g17469NANA11+9721297..9721616NA
LOC_Os11g17480OsAffx.18899.1.S1_at11/1111+9726250..9729878Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os11g17490Os.53540.2.S1_at1/1111+9730897..9731630hypothetical protein
LOC_Os11g17504Os.10419.1.S1_a_at11/1111+9732859..9737703Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os11g17504OsAffx.18901.1.S1_at11/1111+9732859..9737703Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os11g17520OsAffx.13097.1.S1_s_at11/1111+9739339..9743409hypothetical protein
LOC_Os11g17520Os.46613.1.S2_at2/1111+9739339..9743409hypothetical protein
LOC_Os11g17530Os.57138.1.S1_at11/1111+9745970..9750238pentatricopeptide, putative, expressed
LOC_Os11g17530Os.6596.1.S1_at11/1111+9745970..9750238pentatricopeptide, putative, expressed
LOC_Os11g17540Os.48441.1.S1_at11/1111+9751085..9754806Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os11g17550OsAffx.31019.1.S1_at11/1111+9755436..9756398hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53540.2.S1_at--967--5732Chr07:19741328..19741347 (20 bp)
GACGGTCCGCTTCGGCATTTCGTCG
NONE
Os.53540.2.S1_at--88--5831Chr02:6443367..6443391 (25 bp)
GACCTGGATCGTGGAGGCTTCGTCC
NONE
Os.53540.2.S1_at--68--4271Chr02:6443338..6443362 (25 bp)
CCGGAGCTCGACTAGGTGAAGGCCT
NONE
Os.53540.2.S1_at--294--9011Chr02:6443322..6443346 (25 bp)
TGAAGGCCTTGAGCAAGCAGGGTTA
NONE
Os.53540.2.S1_at--683--6831Chr02:6443257..6443281 (25 bp)
GTTTCTTGTCGGAGACGAGCTCTGA
NONE
Os.53540.2.S1_at--628--9471Chr02:6443237..6443261 (25 bp)
TCTGATGATTTCTTTCCACGAGGAG
NONE
Os.53540.2.S1_at--83--3831NONE
CTGCCATTGGAGACGCGAGCGAGCT
NONE
Os.53540.2.S1_at--184--9352Chr11:9730992..9731281 (25 bp)
TCGCGGAGATGCTGCTCCCATGGCG
LOC_Os11g17490
Os.53540.2.S1_at--487--5151Chr02:6443116..6443140 (25 bp)
GCAACGGTTCGCGTGGGAACTTCGA
NONE
Os.53540.2.S1_at--996--7571Chr02:6443066..6443090 (25 bp)
GGGCTGCAGAAGTTATAAATTTCAT
NONE
Os.53540.2.S1_at--922--6471Chr02:6443035..6443059 (25 bp)
GATACTTTTGCATCTTGTCAGTGAA
NONE
Target Sequence 
GACGGTCCGCTTCGGCATTTCGTCGAACACCCTGCGCGCGACCCCGAGGCGGAGGAGCTCGCGAGTTCGGCGCCAGCTCG
TAGCGTAGGCGCAGGAGGAGAAAGCCCGAATTGGCGAGGCGGGCGTGGACCTGGATCGTGGAGGCTTCGTCCCGGGCCGG
AGCTCGACTAGGTGAAGGCCTTGAGCAAGCAGGGTTAGGTGAAGGCGGGACGGAGGCTGGAGGAGTAGGCGGTGAGGGTT
TCTTGTCGGAGACGAGCTCTGATGATTTCTTTCCACGAGGAGGAGGCGATGGTGGCCGCGGGGCGTCTGCCATTGGAGAC
GCGAGCGAGCTCGCGGAGATGCTGCTCCCATGGCGTCAATGGCGGCGGCGGCGGCACGGCAACGGTTCGCGTGGGAACTT
CGAACGGGGAGATAAATTTGCAGTTATGGGGCTGCAGAAGTTATAAATTTCATATACTAGATACTTTTGCATCTTGTCAG
TGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53540.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis