Browse Element(s) Details


OsAffx.31018.4.S1_at

Description tigr:9639.m01600
TID=OsAffx.31018.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AF509753 barley stem rust resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1744010/11enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os07g321004/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17380OsAffx.7132.1.S1_at11/1111+9666331..9673120Protein kinase domain containing protein
LOC_Os11g17380OsAffx.8160.1.S1_x_at1/1111+9666331..9673120Protein kinase domain containing protein
LOC_Os11g17390OsAffx.30226.2.S1_s_at2/1111+9674737..9679437retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g17400NANA11+9681935..9684305transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g17410NANA11+9687193..9689026transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g17420NANA11+9691098..9691628hypothetical protein
LOC_Os11g17430NANA11+9692055..9697114transposon protein, putative, unclassified
LOC_Os11g17440OsAffx.31018.4.S1_at10/1111+9697861..9705987enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os11g17440OsAffx.31018.3.S1_x_at7/1111+9697861..9705987enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os11g17440OsAffx.31018.2.S1_x_at1/1111+9697861..9705987enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os11g17450OsAffx.18898.1.S1_at11/1111+9707331..9707552hypothetical protein
LOC_Os11g17460NANA11+9711287..9712350retrotransposon protein, putative, unclassified
LOC_Os11g17469NANA11+9721297..9721616NA
LOC_Os11g17480OsAffx.18899.1.S1_at11/1111+9726250..9729878Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os11g17490Os.53540.2.S1_at1/1111+9730897..9731630hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31018.4.S1_at--277--2651Chr11:9699431..9699541 (25 bp)
AACCAACAGATACCCGACACTGTGA
LOC_Os11g17440
OsAffx.31018.4.S1_at--631--6452Chr07:19071516..19071540 (25 bp)
GATCACAAATTTGGAGCCTCGCAGT
NONE
OsAffx.31018.4.S1_at--557--9331Chr11:9699390..9699414 (25 bp)
TCGCAGTGCACTCCTACAAAATTTA
LOC_Os11g17440
OsAffx.31018.4.S1_at--415--2971NONE
AATGGAGCTCCAGGCATCGTTAGAA
NONE
OsAffx.31018.4.S1_at--616--3332Chr07:19072347..19072371 (25 bp)
CACGGGCCCCGAAGTTGTATATGAT
LOC_Os07g32100
OsAffx.31018.4.S1_at--735--1132Chr07:19072550..19072574 (25 bp)
AGTCCTTGATTCACTGAACACCCAA
LOC_Os07g32100
OsAffx.31018.4.S1_at--942--2812Chr07:19072611..19072634 (24 bp)
AAGATTAAGATCATGGTGTCCCGGG
LOC_Os07g32100
OsAffx.31018.4.S1_at--794--3191Chr11:9698250..9698274 (25 bp)
CAAGGACATACTGAACTGGGACTAT
LOC_Os11g17440
OsAffx.31018.4.S1_at--691--6311Chr11:9698113..9698137 (25 bp)
GATGACTGCAGCTTTCACGTATTCA
LOC_Os11g17440
OsAffx.31018.4.S1_at--1100--811Chr11:9698070..9698094 (25 bp)
ATGGTCTTCGTCTTGTGAACTCTAC
LOC_Os11g17440
OsAffx.31018.4.S1_at--585--8972Chr07:19072871..19072983 (25 bp)
TGAACTCTACTTCACAGGACCCGTA
LOC_Os07g32100
Target Sequence 
AACCAACAGATACCCGACACTGTGATCACAAATTTGGAGCCTCGCAGTGCACTCCTACAAAATTTAATGGAGCTCCAGGC
ATCGTTAGAATGTATGCTGTAGCTGGAGATGAATTTTGGGAAGCTAGTCATCAACTTGCACACTTCACGGGCCCCGAAGT
TGTATATGATGTTTCAGATAGTCACATGAGCAAGAAGGTATTAGTCCTTGATTCACTGAACACCCAAGATCCACTGGGGA
ATCACGTTTCACCAGGCATGACAAGATTAAGATCATGGTGTCCCGGGTGGAACAAGGACATACTGAACTGGGACTATGAG
GCAGTGGAAAATATACCAGAGCAGCAAAACGGGGATGACTGCAGCTTTCACGTATTCAATAATATGGTGAACTGGGATGG
TCTTCGTCTTGTGAACTCTACTTCACAGGACCCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31018.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis