Browse Element(s) Details


OsAffx.7132.1.S1_at

Description tigr:9639.m01594
TID=OsAffx.7132.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to stem rust resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1738011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17330OsAffx.31015.1.S1_at11/1111+9641016..9645366NB-ARC domain containing protein
LOC_Os11g17330OsAffx.31015.2.S1_s_at11/1111+9641016..9645366NB-ARC domain containing protein
LOC_Os11g17340NANA11+9650873..9651283hypothetical protein
LOC_Os11g17350NANA11+9652410..9653420expressed protein
LOC_Os11g17360OsAffx.7131.1.S1_at10/1111+9654069..9655199hypothetical protein
LOC_Os11g17370OsAffx.22848.4.S1_x_at2/1111+9657427..9659542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17370OsAffx.22848.4.S1_at2/1111+9657427..9659542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17370OsAffx.22848.3.S1_x_at1/1111+9657427..9659542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17380OsAffx.7132.1.S1_at11/1111+9666331..9673120Protein kinase domain containing protein
LOC_Os11g17380OsAffx.8160.1.S1_x_at1/1111+9666331..9673120Protein kinase domain containing protein
LOC_Os11g17390OsAffx.30226.2.S1_s_at2/1111+9674737..9679437retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g17400NANA11+9681935..9684305transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g17410NANA11+9687193..9689026transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g17420NANA11+9691098..9691628hypothetical protein
LOC_Os11g17430NANA11+9692055..9697114transposon protein, putative, unclassified
LOC_Os11g17440OsAffx.31018.4.S1_at10/1111+9697861..9705987enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os11g17440OsAffx.31018.3.S1_x_at7/1111+9697861..9705987enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os11g17440OsAffx.31018.2.S1_x_at1/1111+9697861..9705987enoyl-CoA hydratase/isomerase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7132.1.S1_at--143--2731Chr11:9668917..9668941 (25 bp)
AAGCAGACATGCTCGCAGTGAGACA
LOC_Os11g17380
OsAffx.7132.1.S1_at--888--2611Chr11:9668858..9668882 (25 bp)
AACCGAGACAAAAGGCCTGCGATAA
LOC_Os11g17380
OsAffx.7132.1.S1_at--413--2091Chr11:9668788..9668812 (25 bp)
ACATGTTTATGCGTCAGCCCAAGTC
LOC_Os11g17380
OsAffx.7132.1.S1_at--535--3111Chr11:9666701..9666725 (25 bp)
AATATGTTGGGCTTGATCCTGTCCG
LOC_Os11g17380
OsAffx.7132.1.S1_at--958--4891Chr11:9666673..9666697 (25 bp)
GCTTCGATTCCCCTTCGAGGTAAAG
LOC_Os11g17380
OsAffx.7132.1.S1_at--713--5311Chr11:9666649..9666673 (25 bp)
GAAGGATATATCATGCTGTCTGCAG
LOC_Os11g17380
OsAffx.7132.1.S1_at--288--71Chr11:9666540..9666564 (25 bp)
ATTGCACCATGGTCCAGTTGCTATG
LOC_Os11g17380
OsAffx.7132.1.S1_at--1031--1231Chr11:9666525..9666549 (25 bp)
AGTTGCTATGTCACTGTAACCATGA
LOC_Os11g17380
OsAffx.7132.1.S1_at--1124--10171Chr11:9666477..9666501 (25 bp)
TATTTGCAGTGCCATGACATGTTCG
LOC_Os11g17380
OsAffx.7132.1.S1_at--156--5671Chr11:9666462..9666486 (25 bp)
GACATGTTCGTTGTGCAGAGCACTA
LOC_Os11g17380
OsAffx.7132.1.S1_at--514--8091Chr11:9666427..9666451 (25 bp)
GGACCTCGAACCTGAAACTGAAGAT
LOC_Os11g17380
Target Sequence 
AAGCAGACATGCTCGCAGTGAGACAATGTATTGAATTATCGTTAAGATGTGTGGAGGCCAACCGAGACAAAAGGCCTGCG
ATAAATGATATAATCCATCAACTGAACGAGTTAGATGCTGAGATTGAAAACATGTTTATGCGTCAGCCCAAGTCACTTTT
GGGCCAGAAAAGCTCTGAATCCAAATATGTTGGGCTTGATCCTGTCCGCGAGCTTCGATTCCCCTTCGAGGTAAAGAAGG
ATATATCATGCTGTCTGCAGCTAACAAACCAGACGGATTACTTCATCGCGTTTAATACAAAGGCAAACCAAAAGAAGTAT
AGCACACAACCAAACAAAGGAACCATTGCACCATGGTCCAGTTGCTATGTCACTGTAACCATGAAAGCACAGGAGACGGC
ACCCCCGTATTTGCAGTGCCATGACATGTTCGTTGTGCAGAGCACTAGAGTGAATGAGGACCTCGAACCTGAAACTGAAG
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7132.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis