Browse Element(s) Details


OsAffx.8160.1.S1_x_at

Description gb:NM_196335.1
DB_XREF= gi:37534029
TID=OsAffx.8160.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAa0011L09.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g182701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g158801/11hypothetical protein
LOC_Os11g173801/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18250OsAffx.15843.1.S1_x_at2/111+10231711..10232801hypothetical protein
LOC_Os01g18260Os.47463.1.S1_x_at6/111+10244863..10248561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18260Os.14491.2.S1_x_at5/111+10244863..10248561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270Os.27037.1.A1_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270OsAffx.8160.1.S1_x_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270Os.50196.2.S1_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18280OsAffx.31543.1.S1_x_at11/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.1.S1_at10/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.2.S1_x_at10/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.2.S1_at9/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18290Os.27705.1.S1_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.1.S1_a_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.3.S1_at2/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18300OsAffx.22253.2.S1_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18300OsAffx.22253.2.S1_s_at11/111+10280313..10280699hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8160.1.S1_x_at--992--9671Chr10:12955300..12955324 (25 bp)
TCACTGCCCACATCTGGTTTGCCGT
NONE
OsAffx.8160.1.S1_x_at--522--2511Chr10:12955347..12955371 (25 bp)
AACATTACCGTCTTCTCGACTGTCG
NONE
OsAffx.8160.1.S1_x_at--214--131Chr10:12955350..12955374 (25 bp)
ATTACCGTCTTCTCGACTGTCGTGT
NONE
OsAffx.8160.1.S1_x_at--887--9471Chr10:12955360..12955384 (25 bp)
TCTCGACTGTCGTGTCCCTTCCTGA
NONE
OsAffx.8160.1.S1_x_at--596--1831Chr10:12955459..12955482 (24 bp)
ACGCGCCACTGTGCATGCTGATCGA
NONE
OsAffx.8160.1.S1_x_at--717--106131Chr12:8977627..8977649 (23 bp)
TTCGGTCGACCACGATAGTTCGTGC
NONE
OsAffx.8160.1.S1_x_at--1149--7531Chr10:12956089..12956113 (25 bp)
GTGGCGGCCTCGTTGTGAGAGAGCA
NONE
OsAffx.8160.1.S1_x_at--1006--9271Chr10:12956130..12956154 (25 bp)
TCCGGCATGAGCAGCCCGCCAGAGA
NONE
OsAffx.8160.1.S1_x_at--454--1511Chr10:12956139..12956163 (25 bp)
AGCAGCCCGCCAGAGAAGGAGCTAA
NONE
OsAffx.8160.1.S1_x_at--868--931Chr10:12956275..12956295 (21 bp)
AGGCAAGGCTAGCAGCAGCAAGTCA
NONE
OsAffx.8160.1.S1_x_at--406--3411Chr10:12956283..12956307 (25 bp)
CAGCAGCAAGTCAGGAGATCAAAGA
NONE
Target Sequence 
TCACTGCCCACATCTGGTTTGCCGTCTCCTGCGCCCTCGGCCCCTCCAACATTACCGTCTTCTCGACTGTCGTGTCCCTT
CCTGACCACCCGCCGTCGCTTGACCTGCGCCGCGTGTCGCCGCACGCGCCACTGTGCATGCTGATCGACCGCCACCACGC
GCCGCCGTGCGGGCCGAGAAAGAGGGAGGAAGAGGGGAAAGAGGGGAAAGAGGAGGGGGGTAATTCGGTCGACCACGATA
GTTCGTGCGGGGGAGGGGGCAGCTACGTCTGCAGTGCGGGGCTCGACGGTGGAGGTGGTGGCGGCCTCGTTGTGAGAGAG
CAGGCGCTGGGGAAGAGGTCCGGCATGAGCAGCCCGCCAGAGAAGGAGCTAAAGGCAAGGCTAGCAGCAGCAAGTCAGGA
GATCAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8160.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis