Browse Element(s) Details


Os.29809.2.S1_x_at

Description gb:NM_187734.1
DB_XREF= gi:34902553
GEN=P0498A12.23
TID=Os.29809.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.29809 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0498A12.23 (P0498A12.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0498A12.23 (P0498A12.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1828010/11SNF7 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18260Os.47463.1.S1_x_at6/111+10244863..10248561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18260Os.14491.2.S1_x_at5/111+10244863..10248561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270Os.27037.1.A1_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270OsAffx.8160.1.S1_x_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270Os.50196.2.S1_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18280OsAffx.31543.1.S1_x_at11/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.1.S1_at10/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.2.S1_x_at10/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.2.S1_at9/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18290Os.27705.1.S1_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.1.S1_a_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.3.S1_at2/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18300OsAffx.22253.2.S1_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18300OsAffx.22253.2.S1_s_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18310Os.57179.1.S1_at5/111+10285754..10286422hypothetical protein
LOC_Os01g18310OsAffx.21147.1.S1_at1/111+10285754..10286422hypothetical protein
LOC_Os01g18320Os.5439.1.S1_a_at11/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18320OsAffx.20253.1.S1_x_at2/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29809.2.S1_x_at--103--5351Chr01:10262383..10262407 (25 bp)
GAAGTTTTCGCTCATGGCTGCACAA
LOC_Os01g18280
Os.29809.2.S1_x_at--232--2831Chr01:10262406..10262430 (25 bp)
AAGTTCCTGCTGTCTCAAAGCTTGA
LOC_Os01g18280
Os.29809.2.S1_x_at--407--4931Chr01:10262425..10262449 (25 bp)
GCTTGACCACAACACATTGCACTTA
LOC_Os01g18280
Os.29809.2.S1_x_at--125--5071Chr01:10262476..10262500 (25 bp)
GCAGCTTGATGTACTTGATCGCCAA
LOC_Os01g18280
Os.29809.2.S1_x_at--201--6571Chr01:10263051..10263075 (25 bp)
GATTCACACCACTGCTGGAGAGGGT
LOC_Os01g18280
Os.29809.2.S1_x_at--625--5591NONE
GAAATTGATGCTGCCTTAGTCCGCA
NONE
Os.29809.2.S1_x_at--360--10071Chr01:10263906..10263929 (24 bp)
TAGTCCGCAGCTGGTCCAGTGCTAA
LOC_Os01g18280
Os.29809.2.S1_x_at--667--8451Chr01:10263943..10263967 (25 bp)
TGGCCTTACCCAAGCTGCTGGATGA
LOC_Os01g18280
Os.29809.2.S1_x_at--1012--7091Chr01:10264026..10264495 (25 bp)
GTCACTGCTAGATGAGTTTCCTCAC
LOC_Os01g18280
Os.29809.2.S1_x_at--185--6851Chr01:10264486..10264510 (25 bp)
GTTTCCTCACGTTCAAGAAGATCCA
LOC_Os01g18280
Os.29809.2.S1_x_at--850--5351Chr01:10264502..10264526 (25 bp)
GAAGATCCAGTTTCACATGCCAATG
LOC_Os01g18280
Target Sequence 
GAAGTTTTCGCTCATGGCTGCACAAGTTCCTGCTGTCTCAAAGCTTGACCACAACACATTGCACTTAATTTTGACGGAAG
AAAAGTTGCAGCAGCAGCTTGATGTACTTGATCGCCAATGGCAAATGAAAAGATTCACACCACTGCTGGAGAGGGTTGAA
GAAGTTATAAGCCTAATTGCTAGTGCTGAAACAACTAAGAAGGCGATGAATGAGCATCATGTGAGCGTAGAGGAGGTTAA
CGAGCACCTAAAGGAGGTTGATGACCTTGTTGCAACACAAAGAGAAATTGATGCTGCCTTAGTCCGCAGCTGGTCCAGTG
CTAACCTCCTCACAAACTGGCCTTACCCAAGCTGCTGGATGAGGCAGAACCAGAGGTTGAAGAAGGTGCAGGTGGTGGAG
ATGTGCTGGTTGCTGTGGTGGTCACTGCTAGATGAGTTTCCTCACGTTCAAGAAGATCCAGTTTCACATGCCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29809.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis