Browse Element(s) Details


OsAffx.22253.2.S1_s_at

Description tigr:9629.m01777
TID=OsAffx.22253.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1830011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18270Os.27037.1.A1_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270OsAffx.8160.1.S1_x_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270Os.50196.2.S1_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18280OsAffx.31543.1.S1_x_at11/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.1.S1_at10/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.2.S1_x_at10/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.2.S1_at9/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18290Os.27705.1.S1_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.1.S1_a_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.3.S1_at2/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18300OsAffx.22253.2.S1_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18300OsAffx.22253.2.S1_s_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18310Os.57179.1.S1_at5/111+10285754..10286422hypothetical protein
LOC_Os01g18310OsAffx.21147.1.S1_at1/111+10285754..10286422hypothetical protein
LOC_Os01g18320Os.5439.1.S1_a_at11/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18320OsAffx.20253.1.S1_x_at2/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18330OsAffx.23288.1.S1_at11/111+10294491..10294817hypothetical protein
LOC_Os01g18340NANA1+10300522..10300989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18350OsAffx.11095.1.S1_at11/111+10304895..10305419hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22253.2.S1_s_at--432--851Chr01:10280349..10280373 (25 bp)
ATGGCAACGGCGTGGTGCATTCACC
LOC_Os01g18300
OsAffx.22253.2.S1_s_at--931--8591Chr01:10280361..10280385 (25 bp)
TGGTGCATTCACCACCGCTGGGCCT
LOC_Os01g18300
OsAffx.22253.2.S1_s_at--886--3891Chr01:10280378..10280402 (25 bp)
CTGGGCCTCAAGCATGCTGGATCTA
LOC_Os01g18300
OsAffx.22253.2.S1_s_at--707--2711Chr01:10280387..10280411 (25 bp)
AAGCATGCTGGATCTACCGTCACCG
LOC_Os01g18300
OsAffx.22253.2.S1_s_at--1039--9671Chr01:10280406..10280430 (25 bp)
TCACCGGCCTCGAGAGTGCAGATCA
LOC_Os01g18300
OsAffx.22253.2.S1_s_at--363--9051Chr01:10280422..10280446 (25 bp)
TGCAGATCAGGCATCAAGCGTGCGG
LOC_Os01g18300
OsAffx.22253.2.S1_s_at--820--2951Chr01:10280598..10280622 (25 bp)
AAGGCCATCCTTGCTGAGGCGTTGC
LOC_Os01g18300
OsAffx.22253.2.S1_s_at--634--9111Chr01:10280609..10280633 (25 bp)
TGCTGAGGCGTTGCGTTGCTTTAAC
LOC_Os01g18300
OsAffx.22253.2.S1_s_at--603--8371Chr01:10280615..10280639 (25 bp)
GGCGTTGCGTTGCTTTAACTTCTTC
LOC_Os01g18300
OsAffx.22253.2.S1_s_at--860--10711Chr01:10280624..10280648 (25 bp)
TTGCTTTAACTTCTTCCCCAAGACG
LOC_Os01g18300
OsAffx.22253.2.S1_s_at--562--3231Chr01:10280642..10280666 (25 bp)
CAAGACGCTGACCAAAGACACTGCA
LOC_Os01g18300
Target Sequence 
ATGGCAACGGCGTGGTGCATTCACCACCGCTGGGCCTCAAGCATGCTGGATCTACCGTCACCGGCCTCGAGAGTGCAGAT
CAGGCATCAAGCGTGCGGGTCTGCCGGCGCCGCGGGCCTCGGGAGCGGTGGATCCGTCGCCGTTGGGCCTCATGAGCATG
GATCATCCGCTGCCGGGCCTCGAGAAGCTCTCCCTTGTTGTCGCGACCATCCTCATCGCTGTGGGAAGCTCTCAGCCGTC
CTCGTCGTCAAGGCCATCCTTGCTGAGGCGTTGCGTTGCTTTAACTTCTTCCCCAAGACGCTGACCAAAGACACTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22253.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis