Browse Element(s) Details


Os.57179.1.S1_at

Description gb:AK111088.1
DB_XREF= gi:32996297
TID=Os.57179.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57179 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-F11, full insert sequence.
FL= gb:AK111088.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4154011/11hypothetical protein
LOC_Os01g183105/11hypothetical protein
LOC_Os03g090304/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41500OsAffx.28042.1.S1_at11/116+24876427..24878413D-mannose binding lectin family protein
LOC_Os06g41510OsAffx.28042.2.S1_at11/116+24887619..24890114D-mannose binding lectin family protein
LOC_Os06g41520OsAffx.28043.1.S1_at11/116+24893279..24894834F-box domain containing protein
LOC_Os06g41530NANA6+24899901..24900272hypothetical protein
LOC_Os06g41540Os.57179.1.S1_at11/116+24901269..24902792hypothetical protein
LOC_Os06g41550NANA6+24905276..24905515hypothetical protein
LOC_Os06g41560OsAffx.28045.1.S1_at11/116+24906435..24909008D-mannose binding lectin family protein
LOC_Os06g41570OsAffx.28046.1.S1_at11/116+24912100..24912582hypothetical protein
LOC_Os06g41580OsAffx.15878.1.S1_x_at11/116+24915347..24915781expressed protein
LOC_Os06g41580OsAffx.15878.1.S1_at11/116+24915347..24915781expressed protein
LOC_Os06g41590Os.11823.1.S1_at11/116+24916136..24919286integral membrane HRF1 family protein, putative, expressed
LOC_Os06g41590Os.27436.2.S1_s_at1/116+24916136..24919286integral membrane HRF1 family protein, putative, expressed
LOC_Os06g41600NANA6+24919867..24920145hypothetical protein
LOC_Os06g41610NANA6+24922220..24923644retrotransposon protein, putative, unclassified, expressed
LOC_Os06g41620NANA6+24925921..24926601hypothetical protein
LOC_Os06g41630OsAffx.28048.2.S1_at1/116+24927488..24928347hypothetical protein
LOC_Os06g41630OsAffx.28048.2.S1_x_at1/116+24927488..24928347hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57179.1.S1_at--65--2931Chr06:24901342..24901366 (25 bp)
AAGGAGCGCCGCAAGCTCAGACCCA
LOC_Os06g41540
Os.57179.1.S1_at--1099--1551Chr06:24901355..24901379 (25 bp)
AGCTCAGACCCATGTTCAACGTCGT
LOC_Os06g41540
Os.57179.1.S1_at--929--4593Chr06:24901496..24901520 (25 bp)
GCGACGGGTTAATTAATTCTTTGAT
LOC_Os06g41540
Os.57179.1.S1_at--495--3151Chr06:24901510..24901534 (25 bp)
AATTCTTTGATCCTTTCGATGCTCA
LOC_Os06g41540
Os.57179.1.S1_at--1076--6351Chr06:24901518..24901542 (25 bp)
GATCCTTTCGATGCTCAATTTAGTA
LOC_Os06g41540
Os.57179.1.S1_at--14--10431Chr06:24901544..24901568 (25 bp)
TTAGCATGGCAATTAGCAGTTGAAT
LOC_Os06g41540
Os.57179.1.S1_at--1159--10331Chr06:24901585..24901609 (25 bp)
TTTACATATGTACACTCTGCCTCTC
LOC_Os06g41540
Os.57179.1.S1_at--168--9494Chr06:24901600..24901624 (25 bp)
TCTGCCTCTCAGTGTTTACTGGAGT
LOC_Os06g41540
Os.57179.1.S1_at--137--6093Chr06:24901621..24901645 (25 bp)
GAGTAGCAGTGTTGTTACTCTGCAA
LOC_Os06g41540
Os.57179.1.S1_at--433--6772Chr06:24901634..24901658 (25 bp)
GTTACTCTGCAATGTCAGCTCTTTA
LOC_Os06g41540
Os.57179.1.S1_at--133--1594Chr06:24901650..24901674 (25 bp)
AGCTCTTTATCTTGCCATTCTTTTC
LOC_Os06g41540
Target Sequence 
AAGGAGCGCCGCAAGCTCAGACCCATGTTCAACGTCGTGCCGGGGCTCGACGGGAAGCCCGGCTCCGTCTCGCTCGAGCT
CGGGAGCAAGCCTGGGTGCTTCTTGATCGCCGGCACCAGCGCGAAGGTGCAGGTTGGTTGCAGGAGCCGCGGCGGCGACG
GGTTAATTAATTCTTTGATCCTTTCGATGCTCAATTTAGTAATTAGCATGGCAATTAGCAGTTGAATGGGAAAATGAGTT
GGATTTACATATGTACACTCTGCCTCTCAGTGTTTACTGGAGTAGCAGTGTTGTTACTCTGCAATGTCAGCTCTTTATCT
TGCCATTCTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57179.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis