Browse Element(s) Details


OsAffx.28042.2.S1_at

Description tigr:9634.m03999
TID=OsAffx.28042.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lectin (probable mannose binding), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4151011/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41480Os.52222.1.S1_at11/116+24865900..24870160NB-ARC domain containing protein, expressed
LOC_Os06g41490OsAffx.5077.1.S1_at10/116+24872664..24874065hypothetical protein
LOC_Os06g41490OsAffx.8169.1.S1_at2/116+24872664..24874065hypothetical protein
LOC_Os06g41500OsAffx.28042.1.S1_at11/116+24876427..24878413D-mannose binding lectin family protein
LOC_Os06g41510OsAffx.28042.2.S1_at11/116+24887619..24890114D-mannose binding lectin family protein
LOC_Os06g41520OsAffx.28043.1.S1_at11/116+24893279..24894834F-box domain containing protein
LOC_Os06g41530NANA6+24899901..24900272hypothetical protein
LOC_Os06g41540Os.57179.1.S1_at11/116+24901269..24902792hypothetical protein
LOC_Os06g41550NANA6+24905276..24905515hypothetical protein
LOC_Os06g41560OsAffx.28045.1.S1_at11/116+24906435..24909008D-mannose binding lectin family protein
LOC_Os06g41570OsAffx.28046.1.S1_at11/116+24912100..24912582hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28042.2.S1_at--164--9271Chr06:24889609..24889633 (25 bp)
TCCTCGGTGACCAGCAGATGTACAC
LOC_Os06g41510
OsAffx.28042.2.S1_at--227--7831Chr06:24889663..24889687 (25 bp)
GGTACATTGCCCCTGAGTGGTTCCA
LOC_Os06g41510
OsAffx.28042.2.S1_at--698--1091Chr06:24889678..24889702 (25 bp)
AGTGGTTCCACAGCGAGAGGCGCAT
LOC_Os06g41510
OsAffx.28042.2.S1_at--674--8011Chr06:24889762..24889786 (25 bp)
GGAGGTGCCAAGACCCAGTAACCAG
LOC_Os06g41510
OsAffx.28042.2.S1_at--888--7371Chr06:24889801..24889825 (25 bp)
GTGACGATCATGACAACTCCGTGGT
LOC_Os06g41510
OsAffx.28042.2.S1_at--67--2551Chr06:24889815..24889839 (25 bp)
AACTCCGTGGTCACACTGTTTGGAT
LOC_Os06g41510
OsAffx.28042.2.S1_at--1095--6231Chr06:24889837..24889861 (25 bp)
GATGGGCAAGCCAGTTGGTCAACCA
LOC_Os06g41510
OsAffx.28042.2.S1_at--998--7871Chr06:24889874..24889898 (25 bp)
GGTTATCCTGCATAGCGATGACGAC
LOC_Os06g41510
OsAffx.28042.2.S1_at--554--8471Chr06:24889939..24889963 (25 bp)
TGGCTTTCTTGTGTATCGAGACGAA
LOC_Os06g41510
OsAffx.28042.2.S1_at--10--5271Chr06:24889961..24889985 (25 bp)
GAATCCGTCGCTTCGGCCGATGATG
LOC_Os06g41510
OsAffx.28042.2.S1_at--418--6471Chr06:24890055..24890079 (25 bp)
GATACATTACCGTCCATCTCTAAGG
LOC_Os06g41510
Target Sequence 
TCCTCGGTGACCAGCAGATGTACACGACGGTGACCAATGTGAGAGGAACCAGAGGGTACATTGCCCCTGAGTGGTTCCAC
AGCGAGAGGCGCATCGACACCAAGGTGGACGTGTATAGCTTCGGCGTCGTGCTGCTGGAGATGATATGCTGCAGGAGGTG
CCAAGACCCAGTAACCAGCCGTGGCGAGGGCGGTGACGATCATGACAACTCCGTGGTCACACTGTTTGGATGGGCAAGCC
AGTTGGTCAACCATGGCAGAGTCGAGGTTATCCTGCATAGCGATGACGACGCTGTGGAGGATCTGGAGAGAGTGGAGCGG
TTCGTTCGTGTGGCTTTCTTGTGTATCGAGACGAATCCGTCGCTTCGGCCGATGATGCATCAGGTGGTGCAGATGCTGGA
GGGTGTGGTTGAGGTCCACGCGATGCCTCATCTTCCGAGCTCTATAGATACATTACCGTCCATCTCTAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28042.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis