Browse Element(s) Details


OsAffx.8169.1.S1_at

Description gb:NM_196271.1
DB_XREF= gi:37533901
TID=OsAffx.8169.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0061I18.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g414902/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41460Os.10827.1.S1_x_at11/116+24849445..24852357transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41460Os.46055.2.S1_x_at6/116+24849445..24852357transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41470OsAffx.25936.1.S1_s_at11/116+24855831..24858767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41470OsAffx.25936.7.S1_s_at11/116+24855831..24858767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41470OsAffx.25936.2.S1_x_at5/116+24855831..24858767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41470OsAffx.25936.5.S1_x_at2/116+24855831..24858767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41480Os.52222.1.S1_at11/116+24865900..24870160NB-ARC domain containing protein, expressed
LOC_Os06g41490OsAffx.5077.1.S1_at10/116+24872664..24874065hypothetical protein
LOC_Os06g41490OsAffx.8169.1.S1_at2/116+24872664..24874065hypothetical protein
LOC_Os06g41500OsAffx.28042.1.S1_at11/116+24876427..24878413D-mannose binding lectin family protein
LOC_Os06g41510OsAffx.28042.2.S1_at11/116+24887619..24890114D-mannose binding lectin family protein
LOC_Os06g41520OsAffx.28043.1.S1_at11/116+24893279..24894834F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8169.1.S1_at--222--10631Chr10:12546228..12546252 (25 bp)
TTCGATGAATGTGCTTGCGTGCCGC
NONE
OsAffx.8169.1.S1_at--2--3411Chr10:12546261..12546285 (25 bp)
CAGCTATGGTCAGGGTTTCACTTAT
NONE
OsAffx.8169.1.S1_at--120--837Chr10:12546266..12546290 (25 bp)
ATGGTCAGGGTTTCACTTATCGCAC
NONE
OsAffx.8169.1.S1_at--88--9659Chr10:12546270..12546294 (25 bp)
TCAGGGTTTCACTTATCGCACGATA
NONE
OsAffx.8169.1.S1_at--272--3679Chr10:12546281..12546305 (25 bp)
CTTATCGCACGATAATCGCGTGATT
NONE
OsAffx.8169.1.S1_at--1157--353Chr10:12546292..12546316 (25 bp)
ATAATCGCGTGATTATCGCGGTTAT
NONE
OsAffx.8169.1.S1_at--765--76911Chr10:12546331..12546786 (25 bp)
GGGTACGATGTGATTTTTGTGCGAT
NONE
OsAffx.8169.1.S1_at--104--18917Chr10:12546768..12546790 (23 bp)
ACGATGTGATTTTTGTGCGATTTTA
NONE
OsAffx.8169.1.S1_at--441--104112Chr10:12546776..12546800 (25 bp)
TTTTGTGCGATTTTAGACGATTATC
NONE
OsAffx.8169.1.S1_at--825--10335Chr10:12546787..12546811 (25 bp)
TTTAGACGATTATCACGCGATTATC
NONE
OsAffx.8169.1.S1_at--696--10414Chr10:12546796..12546820 (25 bp)
TTATCACGCGATTATCGCGGTTATC
NONE
Target Sequence 
TTCGATGAATGTGCTTGCGTGCCGCTGGGTGCGCAGCTATGGTCAGGGTTTCACTTATCGCACGATAATCGCGTGATTAT
CGCGGTTATCGCGCTTATCGCGGGGGTACGATGTGATTTTTGTGCGATTTTAGACGATTATCACGCGATTATCGCGGTTA
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis