Browse Element(s) Details


OsAffx.28043.1.S1_at

Description tigr:9634.m04000
TID=OsAffx.28043.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4152011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41480Os.52222.1.S1_at11/116+24865900..24870160NB-ARC domain containing protein, expressed
LOC_Os06g41490OsAffx.5077.1.S1_at10/116+24872664..24874065hypothetical protein
LOC_Os06g41490OsAffx.8169.1.S1_at2/116+24872664..24874065hypothetical protein
LOC_Os06g41500OsAffx.28042.1.S1_at11/116+24876427..24878413D-mannose binding lectin family protein
LOC_Os06g41510OsAffx.28042.2.S1_at11/116+24887619..24890114D-mannose binding lectin family protein
LOC_Os06g41520OsAffx.28043.1.S1_at11/116+24893279..24894834F-box domain containing protein
LOC_Os06g41530NANA6+24899901..24900272hypothetical protein
LOC_Os06g41540Os.57179.1.S1_at11/116+24901269..24902792hypothetical protein
LOC_Os06g41550NANA6+24905276..24905515hypothetical protein
LOC_Os06g41560OsAffx.28045.1.S1_at11/116+24906435..24909008D-mannose binding lectin family protein
LOC_Os06g41570OsAffx.28046.1.S1_at11/116+24912100..24912582hypothetical protein
LOC_Os06g41580OsAffx.15878.1.S1_x_at11/116+24915347..24915781expressed protein
LOC_Os06g41580OsAffx.15878.1.S1_at11/116+24915347..24915781expressed protein
LOC_Os06g41590Os.11823.1.S1_at11/116+24916136..24919286integral membrane HRF1 family protein, putative, expressed
LOC_Os06g41590Os.27436.2.S1_s_at1/116+24916136..24919286integral membrane HRF1 family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28043.1.S1_at--841--5291Chr06:24894241..24894265 (25 bp)
GAAGGCGAAAGCAATCACCGCGCCG
LOC_Os06g41520
OsAffx.28043.1.S1_at--804--10591Chr06:24894213..24894237 (25 bp)
TTCTGCCTGGATTCGCTGCTCGCAT
LOC_Os06g41520
OsAffx.28043.1.S1_at--289--8371Chr06:24894127..24894151 (25 bp)
GGCGTCCTCCATGGGTGATGCTGAC
LOC_Os06g41520
OsAffx.28043.1.S1_at--609--611Chr06:24894110..24894134 (25 bp)
ATGCTGACCTGTACCGTTTGATGGA
LOC_Os06g41520
OsAffx.28043.1.S1_at--932--1851Chr06:24893982..24894006 (25 bp)
ACGACGGTGGATGACATGGAACCAT
LOC_Os06g41520
OsAffx.28043.1.S1_at--532--8171Chr06:24893965..24893989 (25 bp)
GGAACCATGGGAGTGTCCTCTTGAA
LOC_Os06g41520
OsAffx.28043.1.S1_at--621--9551Chr06:24893947..24893971 (25 bp)
TCTTGAAGGCCCTCGCCAAGGGTAC
LOC_Os06g41520
OsAffx.28043.1.S1_at--793--1051Chr06:24893929..24893953 (25 bp)
AGGGTACACCGGTACAGCGTGTCCT
LOC_Os06g41520
OsAffx.28043.1.S1_at--940--2151Chr06:24893916..24893940 (25 bp)
ACAGCGTGTCCTGGCAGGGAGCACT
LOC_Os06g41520
OsAffx.28043.1.S1_at--1058--3871Chr06:24893893..24893917 (25 bp)
CTGTATGTGCATTCTCGTGGTACTT
LOC_Os06g41520
OsAffx.28043.1.S1_at--725--9491Chr06:24893881..24893905 (25 bp)
TCTCGTGGTACTTCTGTTACCAGGT
LOC_Os06g41520
Target Sequence 
GAAGGCGAAAGCAATCACCGCGCCGCCGTTCTGCCTGGATTCGCTGCTCGCATCGCTGGACGGCGCCTGCTGGACTATGG
AGGAGGTGGAGCCGCCGCCGCCACCATCTCCACCGGCGTCCTCCATGGGTGATGCTGACCTGTACCGTTTGATGGAATGG
CCGCCGTCGCCGTACAAGGTGTACGTGTTCTCGTCGAGGAGCGGGCGGTGGGAGGAGAGGGCCTTCGTCAGGGAAGGCGG
TGAGACGGCGGCGGCGACGACGACGGTGGATGACATGGAACCATGGGAGTGTCCTCTTGAAGGCCCTCGCCAAGGGTACA
CCGGTACAGCGTGTCCTGGCAGGGAGCACTGTATGTGCATTCTCGTGGTACTTCTGTTACCAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis