Browse Element(s) Details


OsAffx.15878.1.S1_x_at

Description tigr:9634.m04006
TID=OsAffx.15878.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4158011/11expressed protein
LOC_Os11g115401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41520OsAffx.28043.1.S1_at11/116+24893279..24894834F-box domain containing protein
LOC_Os06g41530NANA6+24899901..24900272hypothetical protein
LOC_Os06g41540Os.57179.1.S1_at11/116+24901269..24902792hypothetical protein
LOC_Os06g41550NANA6+24905276..24905515hypothetical protein
LOC_Os06g41560OsAffx.28045.1.S1_at11/116+24906435..24909008D-mannose binding lectin family protein
LOC_Os06g41570OsAffx.28046.1.S1_at11/116+24912100..24912582hypothetical protein
LOC_Os06g41580OsAffx.15878.1.S1_x_at11/116+24915347..24915781expressed protein
LOC_Os06g41580OsAffx.15878.1.S1_at11/116+24915347..24915781expressed protein
LOC_Os06g41590Os.11823.1.S1_at11/116+24916136..24919286integral membrane HRF1 family protein, putative, expressed
LOC_Os06g41590Os.27436.2.S1_s_at1/116+24916136..24919286integral membrane HRF1 family protein, putative, expressed
LOC_Os06g41600NANA6+24919867..24920145hypothetical protein
LOC_Os06g41610NANA6+24922220..24923644retrotransposon protein, putative, unclassified, expressed
LOC_Os06g41620NANA6+24925921..24926601hypothetical protein
LOC_Os06g41630OsAffx.28048.2.S1_at1/116+24927488..24928347hypothetical protein
LOC_Os06g41630OsAffx.28048.2.S1_x_at1/116+24927488..24928347hypothetical protein
LOC_Os06g41640NANA6+24929058..24934196NB-ARC domain containing protein, expressed
LOC_Os06g41650Os.15920.1.S1_at2/116+24936487..24936777hypothetical protein
LOC_Os06g41660Os.50308.1.S1_at11/116+24938167..24944225NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15878.1.S1_x_at--320--8391Chr06:24915458..24915482 (25 bp)
GGCGACTGCAAGCTGTCGGACATCA
LOC_Os06g41580
OsAffx.15878.1.S1_x_at--334--1051Chr06:24915534..24915558 (25 bp)
AGGTGGCCGTGTCCAACGGGTGCGC
LOC_Os06g41580
OsAffx.15878.1.S1_x_at--181--7471Chr06:24915542..24915566 (25 bp)
GTGTCCAACGGGTGCGCGTGCCCGC
LOC_Os06g41580
OsAffx.15878.1.S1_x_at--541--8531Chr06:24915630..24915654 (25 bp)
TGGACGAGAGCAAGATCCGCGCCGA
LOC_Os06g41580
OsAffx.15878.1.S1_x_at--683--7574Chr11:6413335..6413357 (23 bp)
GGGCTCTGCCTCGTCAACGACGGGA
LOC_Os11g11540
OsAffx.15878.1.S1_x_at--993--3951Chr06:24915708..24915732 (25 bp)
CGGTGACGTTCGTCTACGCGTGGAA
LOC_Os06g41580
OsAffx.15878.1.S1_x_at--767--8931Chr06:24915711..24915735 (25 bp)
TGACGTTCGTCTACGCGTGGAAGCA
LOC_Os06g41580
OsAffx.15878.1.S1_x_at--388--6711Chr06:24915715..24915739 (25 bp)
GTTCGTCTACGCGTGGAAGCAGCCG
LOC_Os06g41580
OsAffx.15878.1.S1_x_at--396--9411Chr06:24915717..24915741 (25 bp)
TCGTCTACGCGTGGAAGCAGCCGCT
LOC_Os06g41580
OsAffx.15878.1.S1_x_at--1045--9531Chr06:24915720..24915744 (25 bp)
TCTACGCGTGGAAGCAGCCGCTGGA
LOC_Os06g41580
OsAffx.15878.1.S1_x_at--1081--1811Chr06:24915723..24915747 (25 bp)
ACGCGTGGAAGCAGCCGCTGGAGTT
LOC_Os06g41580
Target Sequence 
GGCGACTGCAAGCTGTCGGACATCACCGTCACGGCGGCGAGGACGGGGAAGGTGGTGGAGGGGCAGCCGGAGTACGAGGT
GGCCGTGTCCAACGGGTGCGCGTGCCCGCAGAACGGCGTCAGGGTGAGCTGCCCCGGCGGCGGCGGCGGCGGCGTGCCGA
GCGTCGAGCCGGTGGACGAGAGCAAGATCCGCGCCGACGAAGCCGGGCTCTGCCTCGTCAACGACGGGATGCCGGTGGCG
AAGGGCTCGCCGGTGACGTTCGTCTACGCGTGGAAGCAGCCGCTGGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15878.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis