Browse Element(s) Details


Os.11823.1.S1_at

Description gb:AK071563.1
DB_XREF= gi:32981586
TID=Os.11823.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023104M14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023104M14, full insert sequence.
FL= gb:AK071563.1 gb:AK059836.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4159011/11integral membrane HRF1 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41520OsAffx.28043.1.S1_at11/116+24893279..24894834F-box domain containing protein
LOC_Os06g41530NANA6+24899901..24900272hypothetical protein
LOC_Os06g41540Os.57179.1.S1_at11/116+24901269..24902792hypothetical protein
LOC_Os06g41550NANA6+24905276..24905515hypothetical protein
LOC_Os06g41560OsAffx.28045.1.S1_at11/116+24906435..24909008D-mannose binding lectin family protein
LOC_Os06g41570OsAffx.28046.1.S1_at11/116+24912100..24912582hypothetical protein
LOC_Os06g41580OsAffx.15878.1.S1_x_at11/116+24915347..24915781expressed protein
LOC_Os06g41580OsAffx.15878.1.S1_at11/116+24915347..24915781expressed protein
LOC_Os06g41590Os.11823.1.S1_at11/116+24916136..24919286integral membrane HRF1 family protein, putative, expressed
LOC_Os06g41590Os.27436.2.S1_s_at1/116+24916136..24919286integral membrane HRF1 family protein, putative, expressed
LOC_Os06g41600NANA6+24919867..24920145hypothetical protein
LOC_Os06g41610NANA6+24922220..24923644retrotransposon protein, putative, unclassified, expressed
LOC_Os06g41620NANA6+24925921..24926601hypothetical protein
LOC_Os06g41630OsAffx.28048.2.S1_at1/116+24927488..24928347hypothetical protein
LOC_Os06g41630OsAffx.28048.2.S1_x_at1/116+24927488..24928347hypothetical protein
LOC_Os06g41640NANA6+24929058..24934196NB-ARC domain containing protein, expressed
LOC_Os06g41650Os.15920.1.S1_at2/116+24936487..24936777hypothetical protein
LOC_Os06g41660Os.50308.1.S1_at11/116+24938167..24944225NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11823.1.S1_at--440--2791Chr06:24916705..24916729 (25 bp)
AAGAGGGTTCTTCTGGGCGCACCAA
LOC_Os06g41590
Os.11823.1.S1_at--748--1671Chr06:24916660..24916684 (25 bp)
AGCCGGAATCACTACTTTCTTCTTT
LOC_Os06g41590
Os.11823.1.S1_at--443--631Chr06:24916612..24916636 (25 bp)
ATGCTCTTCTGGCTAGGCAACATCA
LOC_Os06g41590
Os.11823.1.S1_at--364--3391Chr06:24916589..24916613 (25 bp)
CAGCGGGTGATATTTCAGCCTTATT
LOC_Os06g41590
Os.11823.1.S1_at--443--10811Chr06:24916429..24916453 (25 bp)
TTGTCTGTCCGGCATTAACTGAAGA
LOC_Os06g41590
Os.11823.1.S1_at--234--6731Chr06:24916387..24916411 (25 bp)
GTTCTTATCGTACATCATCGCTATT
LOC_Os06g41590
Os.11823.1.S1_at--1037--4871Chr06:24916368..24916392 (25 bp)
GCTATTTTGCCTTCTGTATCTCATT
LOC_Os06g41590
Os.11823.1.S1_at--810--10391Chr06:24916344..24916368 (25 bp)
TTTTGTTACTTAGTCACCGCGATCG
LOC_Os06g41590
Os.11823.1.S1_at--730--6291Chr06:24916275..24916299 (25 bp)
GATGATAATGTTCCTTGTCGTGCAC
LOC_Os06g41590
Os.11823.1.S1_at--1028--7191Chr06:24916259..24916283 (25 bp)
GTCGTGCACTTCAATTGCTTCTGAA
LOC_Os06g41590
Os.11823.1.S1_at--430--7071Chr06:24916177..24916201 (25 bp)
GTAATTCCTTACAAACTCCGTCTGA
LOC_Os06g41590
Target Sequence 
AAGAGGGTTCTTCTGGGCGCACCAAGGAGCTATGAGAGACACCCCAGCCGGAATCACTACTTTCTTCTTTTCCTCGCGGT
TGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGA
TTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATTCTTGTGGAAGTGGTAAATTGCTGG
ACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATACACGAATGT
TCTTATCGTACATCATCGCTATTTTGCCTTCTGTATCTCATTTTTGTTACTTAGTCACCGCGATCGCCTTCAAGCTGTCT
TACGACCTGAGACATGTCTGTATAAAATCAGATGATAATGTTCCTTGTCGTGCACTTCAATTGCTTCTGAAATGTGATTC
TTCAGTGGACTGGGGATATGGGAGTACATAGGACCAAGAGAGTGTTGTGTAATTCCTTACAAACTCCGTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis