Browse Element(s) Details


Os.50308.1.S1_at

Description gb:AK120647.1
DB_XREF= gi:37990270
TID=Os.50308.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50308 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155H07, full insert sequence.
FL= gb:AK120647.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4166011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41580OsAffx.15878.1.S1_x_at11/116+24915347..24915781expressed protein
LOC_Os06g41580OsAffx.15878.1.S1_at11/116+24915347..24915781expressed protein
LOC_Os06g41590Os.11823.1.S1_at11/116+24916136..24919286integral membrane HRF1 family protein, putative, expressed
LOC_Os06g41590Os.27436.2.S1_s_at1/116+24916136..24919286integral membrane HRF1 family protein, putative, expressed
LOC_Os06g41600NANA6+24919867..24920145hypothetical protein
LOC_Os06g41610NANA6+24922220..24923644retrotransposon protein, putative, unclassified, expressed
LOC_Os06g41620NANA6+24925921..24926601hypothetical protein
LOC_Os06g41630OsAffx.28048.2.S1_at1/116+24927488..24928347hypothetical protein
LOC_Os06g41630OsAffx.28048.2.S1_x_at1/116+24927488..24928347hypothetical protein
LOC_Os06g41640NANA6+24929058..24934196NB-ARC domain containing protein, expressed
LOC_Os06g41650Os.15920.1.S1_at2/116+24936487..24936777hypothetical protein
LOC_Os06g41660Os.50308.1.S1_at11/116+24938167..24944225NB-ARC domain containing protein, expressed
LOC_Os06g41670Os.54120.1.S1_at11/116+24953267..24958581NB-ARC domain containing protein, expressed
LOC_Os06g41680NANA6+24962377..24963245hypothetical protein
LOC_Os06g41690Os.53845.1.S1_at10/116+24965560..24977049retrotransposon protein, putative, Ty1-copia subclass, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50308.1.S1_at--488--8531Chr06:24939138..24939162 (25 bp)
TGGACAGGTTGATCCCATGATTCCT
LOC_Os06g41660
Os.50308.1.S1_at--46--2911Chr06:24939109..24939133 (25 bp)
AAGGTCGTGCTATGTGCTCAGTTTC
LOC_Os06g41660
Os.50308.1.S1_at--99--6851Chr06:24939089..24939113 (25 bp)
GTTTCTGTGTTTAGCATCTTCTTCT
LOC_Os06g41660
Os.50308.1.S1_at--966--10211Chr06:24939042..24939066 (25 bp)
TATTCTCTGCGCAATTTCAGGGACA
LOC_Os06g41660
Os.50308.1.S1_at--953--7311Chr06:24939001..24939025 (25 bp)
GTGCTCGTGAAAACATGGGCCAATT
LOC_Os06g41660
Os.50308.1.S1_at--487--8651Chr06:24938986..24939010 (25 bp)
TGGGCCAATTCAGCAATTCTGTTTG
LOC_Os06g41660
Os.50308.1.S1_at--373--5411Chr06:24938891..24938915 (25 bp)
GAAGCTGCTTCCCAGTTGAATTCTC
LOC_Os06g41660
Os.50308.1.S1_at--407--5211Chr06:24938434..24938898 (25 bp)
GAATTCTCTTGCTCAGGCAGTGCAG
LOC_Os06g41660
Os.50308.1.S1_at--176--111Chr06:24938395..24938419 (25 bp)
ATTCGTGATAACTTCGGCTCAGTCT
LOC_Os06g41660
Os.50308.1.S1_at--990--8311Chr06:24938380..24938404 (25 bp)
GGCTCAGTCTTGTTATCATCCTGGA
LOC_Os06g41660
Os.50308.1.S1_at--854--8551Chr06:24938303..24938327 (25 bp)
TGGAGGTTTAGCTCTGGCCACTGAA
LOC_Os06g41660
Target Sequence 
TGGACAGGTTGATCCCATGATTCCTGTGTAAGGTCGTGCTATGTGCTCAGTTTCTGTGTTTAGCATCTTCTTCTCAATGT
CTTTGCTTAATTTTTTTATTCTCTGCGCAATTTCAGGGACAAAAAGAAGGAAATTTTGTGCTCGTGAAAACATGGGCCAA
TTCAGCAATTCTGTTTGCTGAATGTTTCCATATTGGGAGAGTTCAGCTAGAGTTGACGACGAGAAGATACCCTTGAACGG
AAAATTGGAAGCTGCTTCCCAGTTGAATTCTCTTGCTCAGGCAGTGCAGGTATTGGCATAATTATTCGTGATAACTTCGG
CTCAGTCTTGTTATCATCCTGGAAGTACATTCGACATGGAGCATCAGCAGAAGAATTGAAACTATTGGCTTGTCGTGGAG
GTTTAGCTCTGGCCACTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50308.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis