Browse Element(s) Details


Os.53845.1.S1_at

Description gb:AK100375.1
DB_XREF= gi:32985584
TID=Os.53845.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023084L14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084L14, full insert sequence.
FL= gb:AK100375.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4169010/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41660Os.50308.1.S1_at11/116+24938167..24944225NB-ARC domain containing protein, expressed
LOC_Os06g41670Os.54120.1.S1_at11/116+24953267..24958581NB-ARC domain containing protein, expressed
LOC_Os06g41680NANA6+24962377..24963245hypothetical protein
LOC_Os06g41690Os.53845.1.S1_at10/116+24965560..24977049retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g41700Os.54103.1.S1_at11/116+24981202..24985655Alpha-expansin 20 precursor, putative, expressed
LOC_Os06g41710Os.38031.1.S1_at11/116+24985848..24996893CW-type Zinc Finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53845.1.S1_at--748--3171Chr06:24974307..24974331 (25 bp)
AATTGTTTGCTCCTCTATGCTATGG
LOC_Os06g41690
Os.53845.1.S1_at--147--5151Chr06:24974271..24974295 (25 bp)
GCAAAATTCTTGTTACTGCTCGAAC
LOC_Os06g41690
Os.53845.1.S1_at--578--2911Chr06:24974234..24974258 (25 bp)
AAGGATTTTGGGTTGCCCAGCACCA
LOC_Os06g41690
Os.53845.1.S1_at--342--10851Chr06:24974177..24974201 (25 bp)
TTGGAACCTCTTCAGGATCTGCGCA
LOC_Os06g41690
Os.53845.1.S1_at--667--7151Chr06:24974114..24974138 (25 bp)
GTCTATCGGTGAATGTATTGTCCAA
LOC_Os06g41690
Os.53845.1.S1_at--567--3131Chr06:24973967..24973991 (25 bp)
AATTTTGCGTCTGAGCTATGAATGC
LOC_Os06g41690
Os.53845.1.S1_at--1069--1011Chr06:24973937..24973961 (25 bp)
AGGTCACCTCCAGCAATGTTTTACT
LOC_Os06g41690
Os.53845.1.S1_at--1118--731Chr06:24973922..24973946 (25 bp)
ATGTTTTACTTTTTGCAGCCTGTTC
LOC_Os06g41690
Os.53845.1.S1_at--498--6691Chr06:24973901..24973925 (25 bp)
GTTCCCCAAAGGCTATTCTCTTGAG
LOC_Os06g41690
Os.53845.1.S1_at--177--9531Chr06:24973885..24973909 (25 bp)
TCTCTTGAGCCTGACTTGTTGGTGA
LOC_Os06g41690
Os.53845.1.S1_at--205--211NONE
ATTTGTTCATGGTCATATGGGCACA
NONE
Target Sequence 
AATTGTTTGCTCCTCTATGCTATGGAGCTAAAGGAAGCAAAATTCTTGTTACTGCTCGAACAAATATTGTTTCAAGGATT
TTGGGTTGCCCAGCACCATTCCATTTGGAGGGTCTGAAGGGTGAAGATAGTTGGAACCTCTTCAGGATCTGCGCATTTGG
CGCTGAAGATCCAGGAAATTATCCAGAACTAGAGTCTATCGGTGAATGTATTGTCCAAAAGTTGAATGGCTCAGCATTAG
TCATAAAGGTTGTTGGTGCACATTTGAATGCTAACCTCAACGTTGAAGAGTGGACACGAGTTATGAAAAGTAGTTCATCA
AACAAGGAAGACATTATGCAAATTTTGCGTCTGAGCTATGAATGCTTGCCAGGTCACCTCCAGCAATGTTTTACTTTTTG
CAGCCTGTTCCCCAAAGGCTATTCTCTTGAGCCTGACTTGTTGGTGAATATGTGGATAGCCCATAAATTTGTTCATGGTC
ATATGGGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53845.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis