Browse Element(s) Details


Os.54103.1.S1_at

Description gb:AK101940.1
DB_XREF= gi:32987149
TID=Os.54103.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54103 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033074I02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033074I02, full insert sequence.
FL= gb:AK101940.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4170011/11Alpha-expansin 20 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41670Os.54120.1.S1_at11/116+24953267..24958581NB-ARC domain containing protein, expressed
LOC_Os06g41680NANA6+24962377..24963245hypothetical protein
LOC_Os06g41690Os.53845.1.S1_at10/116+24965560..24977049retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g41700Os.54103.1.S1_at11/116+24981202..24985655Alpha-expansin 20 precursor, putative, expressed
LOC_Os06g41710Os.38031.1.S1_at11/116+24985848..24996893CW-type Zinc Finger family protein, expressed
LOC_Os06g41720OsAffx.15880.1.S1_s_at11/116+25006642..25007270hypothetical protein
LOC_Os06g41720OsAffx.15880.1.S1_at7/116+25006642..25007270hypothetical protein
LOC_Os06g41720OsAffx.31575.1.S1_x_at1/116+25006642..25007270hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54103.1.S1_at--777--10651Chr06:24983101..24983125 (25 bp)
TTCCCCAAGGAGCACTTCGAGATGT
LOC_Os06g41700
Os.54103.1.S1_at--1132--3311Chr06:24983113..24983137 (25 bp)
CACTTCGAGATGTCGGAGGCCGCGT
LOC_Os06g41700
Os.54103.1.S1_at--1054--4911Chr06:24985207..24985231 (25 bp)
GCTTCCTGCAGGTGCTGATCACGAA
LOC_Os06g41700
Os.54103.1.S1_at--727--1431Chr06:24985315..24985339 (25 bp)
AGAACTGGCAGTGCGACGCCGACCT
LOC_Os06g41700
Os.54103.1.S1_at--990--9331Chr06:24985405..24985429 (25 bp)
TCGCGCCGCCGGACTGGATGTTCGC
LOC_Os06g41700
Os.54103.1.S1_at--138--8571Chr06:24985419..24985443 (25 bp)
TGGATGTTCGCGCAGACCTTCGAAG
LOC_Os06g41700
Os.54103.1.S1_at--821--5831Chr06:24985433..24985457 (25 bp)
GACCTTCGAAGGCAAGCAGTTCGTC
LOC_Os06g41700
Os.54103.1.S1_at--943--2711Chr06:24985446..24985470 (25 bp)
AAGCAGTTCGTCGAGTAGGTGTCGA
LOC_Os06g41700
Os.54103.1.S1_at--960--7451Chr06:24985464..24985488 (25 bp)
GTGTCGACGATGTGGGTGTCATTCT
LOC_Os06g41700
Os.54103.1.S1_at--101--1891Chr06:24985470..24985494 (25 bp)
ACGATGTGGGTGTCATTCTTGGAAT
LOC_Os06g41700
Os.54103.1.S1_at--575--471Chr06:24985580..24985604 (25 bp)
ATCTGCTCAGCATGGCAAACGAAAT
LOC_Os06g41700
Target Sequence 
TTCCCCAAGGAGCACTTCGAGATGTCGGAGGCCGCGTTCCTCCGCGTCGCCAAGGCCAAGGCCGACATTGTGCCGGTGCA
GTTCCGGAGGGTGAGCTGTGACAGGGCAGGGGGGATGAGGTTCACCATCACCGGCGGCGCCAGCTTCCTGCAGGTGCTGA
TCACGAACGTGGCGGCGGACGGGGAGGTGGCGGCGGTGAAGGTGAAAGGGTCGAGGACCGGGTGGATCCCGATGGGGAGG
AACTGGGGCCAGAACTGGCAGTGCGACGCCGACCTCCGCGGCCAGCCGCTGTCGTTCGAGGTCACCGGCGGGAGGGGCCG
CACGGTCGTCGCCTACAGCGTCGCGCCGCCGGACTGGATGTTCGCGCAGACCTTCGAAGGCAAGCAGTTCGTCGAGTAGG
TGTCGACGATGTGGGTGTCATTCTTGGAATGATTGTAATTATTATGGTTATAATTATATTATACAGGTGAAAAACAACTG
TTTTGGTTTGGTTTTGGTTTGGATGTTGTTGTTTGATCTGCTCAGCATGGCAAACGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54103.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis