Browse Element(s) Details


Os.38031.1.S1_at

Description gb:AK070840.1
DB_XREF= gi:32980863
TID=Os.38031.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38031 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033136G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072C10, full insert sequence.
FL= gb:AK070840.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4171011/11CW-type Zinc Finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41680NANA6+24962377..24963245hypothetical protein
LOC_Os06g41690Os.53845.1.S1_at10/116+24965560..24977049retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g41700Os.54103.1.S1_at11/116+24981202..24985655Alpha-expansin 20 precursor, putative, expressed
LOC_Os06g41710Os.38031.1.S1_at11/116+24985848..24996893CW-type Zinc Finger family protein, expressed
LOC_Os06g41720OsAffx.15880.1.S1_s_at11/116+25006642..25007270hypothetical protein
LOC_Os06g41720OsAffx.15880.1.S1_at7/116+25006642..25007270hypothetical protein
LOC_Os06g41720OsAffx.31575.1.S1_x_at1/116+25006642..25007270hypothetical protein
LOC_Os06g41730Os.12814.2.S1_at11/116+25012596..25018847ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os06g41730Os.12814.3.S1_at11/116+25012596..25018847ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os06g41730Os.12814.3.S1_x_at11/116+25012596..25018847ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os06g41740NANA6+25019460..25020425transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38031.1.S1_at--975--6291Chr06:24986581..24986605 (25 bp)
GATGATGCTGAAGGCGACTCCTCAC
LOC_Os06g41710
Os.38031.1.S1_at--587--6571Chr06:24986291..24986315 (25 bp)
GATTCCTTTGTTTAGATGCCGATGC
LOC_Os06g41710
Os.38031.1.S1_at--297--2351Chr06:24986249..24986273 (25 bp)
AAAGCAGCTCTTCCCGTGGTGTAGT
LOC_Os06g41710
Os.38031.1.S1_at--1062--2531Chr06:24986186..24986210 (25 bp)
AACTCATCAATCGTAGCGGCTTGTT
LOC_Os06g41710
Os.38031.1.S1_at--52--2411Chr06:24986148..24986172 (25 bp)
AAAACTGCGACCTCGTCTGTAAGTA
LOC_Os06g41710
Os.38031.1.S1_at--942--9451Chr06:24986133..24986157 (25 bp)
TCTGTAAGTAGTGTGCATCCTCGCT
LOC_Os06g41710
Os.38031.1.S1_at--1114--4971Chr06:24986119..24986143 (25 bp)
GCATCCTCGCTCATGGAAGTTCTAT
LOC_Os06g41710
Os.38031.1.S1_at--178--5531Chr06:24985982..24986006 (25 bp)
GAAAACTTCTTCACTGCACTAGCGT
LOC_Os06g41710
Os.38031.1.S1_at--158--9911Chr06:24985945..24985969 (25 bp)
TACTCTCTTCGTAGTTTTTCGTCAC
LOC_Os06g41710
Os.38031.1.S1_at--1140--7371Chr06:24985910..24985934 (25 bp)
GTGAGTGTGAAACCCAGTGCCATTT
LOC_Os06g41710
Os.38031.1.S1_at--1009--1131Chr06:24985895..24985919 (25 bp)
AGTGCCATTTGCATGTTCACCCAAT
LOC_Os06g41710
Target Sequence 
GATGATGCTGAAGGCGACTCCTCACAAACTCAGCCTGGTACCCCTCGCCCTGTTTTGAAGAGGATACGTAGGGGCCCTGC
TAGAAGTTGTAAGCAGTCATGAAGAACGAAAATTGCCAGCTAGCAATAGATTCCTTTGTTTAGATGCCGATGCGTGATGC
TTCTCTTGCCAAAGCAGCTCTTCCCGTGGTGTAGTTGGTTCCCGATTTGTCTCTGCTTGCTTAAGCAAAACTCAACTCAT
CAATCGTAGCGGCTTGTTTATATATGAAAAAAAAACTGCGACCTCGTCTGTAAGTAGTGTGCATCCTCGCTCATGGAAGT
TCTATATATAGGCTTTAGCTTTTAGGTGCTGAAATGTGTACAGTAGCCTGTCAGCAAGCTAGGCGCGACAGTTTCGATAG
CATGATTGTTGTGTGATGATCATCACCAGTATGACTAGAAAACTTCTTCACTGCACTAGCGTGTGCTTTACTGCTACTCT
CTTCGTAGTTTTTCGTCACTGTGCCTGTGGTGAGTGTGAAACCCAGTGCCATTTGCATGTTCACCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38031.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis