Browse Element(s) Details


Os.12814.3.S1_x_at

Description gb:AK099075.1
DB_XREF= gi:32984284
TID=Os.12814.3
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12814 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033048O14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170P10, full insert sequence.
FL= gb:AK101550.1 gb:AK073058.1 gb:AK099075.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4173011/11ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41710Os.38031.1.S1_at11/116+24985848..24996893CW-type Zinc Finger family protein, expressed
LOC_Os06g41720OsAffx.15880.1.S1_s_at11/116+25006642..25007270hypothetical protein
LOC_Os06g41720OsAffx.15880.1.S1_at7/116+25006642..25007270hypothetical protein
LOC_Os06g41720OsAffx.31575.1.S1_x_at1/116+25006642..25007270hypothetical protein
LOC_Os06g41730Os.12814.2.S1_at11/116+25012596..25018847ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os06g41730Os.12814.3.S1_at11/116+25012596..25018847ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os06g41730Os.12814.3.S1_x_at11/116+25012596..25018847ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os06g41740NANA6+25019460..25020425transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g41750OsAffx.15881.1.S1_at11/116+25024005..25033554TPR Domain containing protein, expressed
LOC_Os06g41760NANA6+25037385..25038575hypothetical protein
LOC_Os06g41770Os.10686.1.S1_at9/116+25040775..25043104bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005622cellular_componentintracellular
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12814.3.S1_x_at--1097--8831Chr06:25017885..25017909 (25 bp)
TGATCCTCATCAAACTTCGGCAGTT
LOC_Os06g41730
Os.12814.3.S1_x_at--161--1251Chr06:25017906..25017930 (25 bp)
AGTTGTCACTCTCCATGGACAGCTA
LOC_Os06g41730
Os.12814.3.S1_x_at--790--211Chr06:25017930..25017954 (25 bp)
ATTTGTCCGTGCACCATTCGAGCAG
LOC_Os06g41730
Os.12814.3.S1_x_at--948--51Chr06:25018393..25018417 (25 bp)
ATTGACTTGGGCCTGTTCATCCTGA
LOC_Os06g41730
Os.12814.3.S1_x_at--279--10531Chr06:25018408..25018432 (25 bp)
TTCATCCTGATCTTCGTTGCAAACT
LOC_Os06g41730
Os.12814.3.S1_x_at--401--2531Chr06:25018429..25018453 (25 bp)
AACTAGTTACTTTCTGCTTCATTAC
LOC_Os06g41730
Os.12814.3.S1_x_at--200--151Chr06:25018449..25018473 (25 bp)
ATTACTCCTGCCATGTTGTCTATTC
LOC_Os06g41730
Os.12814.3.S1_x_at--943--731Chr06:25018594..25018618 (25 bp)
ATGTTCATGGTTTCTTTCTTCCTTT
LOC_Os06g41730
Os.12814.3.S1_x_at--419--8691Chr06:25018746..25018770 (25 bp)
TGTGCATTGCTGTTGTATCTGTATA
LOC_Os06g41730
Os.12814.3.S1_x_at--880--5191Chr06:25018774..25018798 (25 bp)
GAATTGACAACTGTGCCTGACCATC
LOC_Os06g41730
Os.12814.3.S1_x_at--53--5851Chr06:25018792..25018816 (25 bp)
GACCATCCCTTGAAACTATTACTGA
LOC_Os06g41730
Target Sequence 
TGATCCTCATCAAACTTCGGCAGTTGTCACTCTCCATGGACAGCTATTTGTCCGTGCACCATTCGAGCAGTCAAAGTAAA
TGGTGCTCTACAAGATGAAGCGCAACATGCAAGGTTGCTTTTGTAGGTGGGGGTTTATGTGATTGACTTGGGCCTGTTCA
TCCTGATCTTCGTTGCAAACTAGTTACTTTCTGCTTCATTACTCCTGCCATGTTGTCTATTCTGTATTGATTAATTCTAG
TTAACTAGATGGTCTAGTTATGTATCTTGTAGTTCGTTAATTGTGATATGTAGCTTAAGTTCAGCTCTATTAGTTTAGAA
TGTTAATAGCCTGATGCTAAACATGTTCATGGTTTCTTTCTTCCTTTTTTTTTTCTCAACTAAAGAAAAGGTGATAATTT
GTAGCATGTAGCTTGTGAGGTTATTCCTAATACTCAGTTCTCATACTACTCAGAACNTGAAGACAAGATAGATTCTTGGA
TGTAACTGTTGCCNTTGTGCATTGCTGTTGTATCTGTATAACTGAATTGACAACTGTGCCTGACCATCCCTTGAAACTAT
TACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12814.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis