Browse Element(s) Details


OsAffx.31575.1.S1_x_at

Description tigr:9640.m00352
TID=OsAffx.31575.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY056154 putative scarecrow 3 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0457011/11GRAS family transcription factor containing protein, expressed
LOC_Os12g0437011/11GRAS family transcription factor containing protein
LOC_Os06g417201/11hypothetical protein
LOC_Os04g416301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04540OsAffx.19485.1.S1_s_at11/1111+1916489..1917513Sulfotransferase domain containing protein, expressed
LOC_Os11g04540OsAffx.19485.1.S1_at10/1111+1916489..1917513Sulfotransferase domain containing protein, expressed
LOC_Os11g04540OsAffx.3105.1.S1_at1/1111+1916489..1917513Sulfotransferase domain containing protein, expressed
LOC_Os11g04550OsAffx.30816.1.S1_s_at11/1111+1919916..1920932Sulfotransferase domain containing protein
LOC_Os11g04550OsAffx.30816.2.S1_at11/1111+1919916..1920932Sulfotransferase domain containing protein
LOC_Os11g04560Os.11301.1.S1_at11/1111+1930436..1931206EF hand family protein, expressed
LOC_Os11g04560Os.11301.1.S1_x_at11/1111+1930436..1931206EF hand family protein, expressed
LOC_Os11g04570OsAffx.31575.1.S1_x_at11/1111+1932987..1937558GRAS family transcription factor containing protein, expressed
LOC_Os11g04580OsAffx.24964.1.S1_s_at11/1111+1939369..1940190hypothetical protein
LOC_Os11g04580OsAffx.24964.1.S1_x_at11/1111+1939369..1940190hypothetical protein
LOC_Os11g04580OsAffx.24964.2.S1_s_at7/1111+1939369..1940190hypothetical protein
LOC_Os11g04580OsAffx.24964.2.S1_x_at3/1111+1939369..1940190hypothetical protein
LOC_Os11g04590OsAffx.19487.1.S1_x_at11/1111+1941620..1943002GRAS family transcription factor containing protein
LOC_Os11g04600Os.49532.1.S1_s_at4/1111+1950555..1953193ankyrin repeat family protein, putative, expressed
LOC_Os11g04610NANA11+1959939..1960652retrotransposon, putative, centromere-specific
LOC_Os11g04620NANA11+1962165..1964246retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0008356biological_processasymmetric cell division
GO:0009630biological_processgravitropism
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010187biological_processnegative regulation of seed germination
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31575.1.S1_x_at--149--1652Chr12:1853155..1853179 (25 bp)
AGCCCCGACGCGTCCGTGGTGTCGT
LOC_Os12g04370
OsAffx.31575.1.S1_x_at--822--8074Chr03:23094539..23094558 (20 bp)
GGAGCTTCCTGTCGGCGGTGAGGTC
NONE
OsAffx.31575.1.S1_x_at--371--7393Chr12:1853047..1853071 (25 bp)
GTGAGGTCGCTGTCCCCGAAGATCA
LOC_Os12g04370
OsAffx.31575.1.S1_x_at--671--4732Chr12:1853039..1853063 (25 bp)
GCTGTCCCCGAAGATCATGGTGATG
LOC_Os12g04370
OsAffx.31575.1.S1_x_at--9--692Chr12:1853017..1853041 (25 bp)
ATGACGGAGCAGGAGGCGAACCACA
LOC_Os12g04370
OsAffx.31575.1.S1_x_at--52--892Chr12:1853004..1853028 (25 bp)
AGGCGAACCACAACGGCGGCGCGTT
LOC_Os12g04370
OsAffx.31575.1.S1_x_at--25--6692Chr12:1852982..1853006 (25 bp)
GTTCCAGGAGCGGTTCGACGAGGCG
LOC_Os12g04370
OsAffx.31575.1.S1_x_at--306--4832Chr12:1852958..1852982 (25 bp)
GCTCAACTACTACGCGTCGCTGTTC
LOC_Os12g04370
OsAffx.31575.1.S1_x_at--1073--8792Chr12:1852938..1852962 (25 bp)
TGTTCGACTGCCTGCAGCGGAGCGC
LOC_Os12g04370
OsAffx.31575.1.S1_x_at--507--5815Chr08:1367206..1367539 (25 bp)
GACGCCGGCGGCCATGGCTTCTTCT
NONE
OsAffx.31575.1.S1_x_at--73--10574Chr04:24472703..24472727 (25 bp)
TTCTTCTGCTGGCACAAGAGGCCGC
LOC_Os04g41630
Target Sequence 
AGCCCCGACGCGTCCGTGGTGTCGTCGCTGTCACCCCACTCCCCCGCAGCAGCAACGGCGGCGCACCCGACGACGTCGAC
GCCGAAGCTGGGGAGCTTCCTGTCGGCGGTGAGGTCGCTGTCCCCGAAGATCATGGTGATGACGGAGCAGGAGGCGAACC
ACAACGGCGGCGCGTTCCAGGAGCGGTTCGACGAGGCGCTCAACTACTACGCGTCGCTGTTCGACTGCCTGCAGCGGAGC
GCGGCGGCGGCGGCGGAGCGCGCGCGCGTGGAGCGCGTGCTGCTCGGGGAGGAGATCCGCGGCGTGGTGGCGTGCGAGGG
GGCGGAGCGGACGGAGCGGCACGAGCGGGCGCGGCAGTGGGCGGCGCGGATGGAGGCGGCCGGGATGGAGTCGGTGGGGC
TGAGCTACAGCGGCGCCATGGAGGCGAGGAAGCTGCTGCAGAGCTGCGGGTGGGTGGGGCCGTACGAGGTGAGGCACGAC
GCCGGCGGCCATGGCTTCTTCTTCTGCTGGCACAAGAGGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31575.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis