Browse Element(s) Details


Os.49532.1.S1_s_at

Description gb:AK060933.1
DB_XREF= gi:32970951
TID=Os.49532.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49532 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B05, full insert sequence.
FL= gb:AK060933.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g046004/11ankyrin repeat family protein, putative, expressed
LOC_Os12g044104/11ankyrin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04560Os.11301.1.S1_at11/1111+1930436..1931206EF hand family protein, expressed
LOC_Os11g04560Os.11301.1.S1_x_at11/1111+1930436..1931206EF hand family protein, expressed
LOC_Os11g04570OsAffx.31575.1.S1_x_at11/1111+1932987..1937558GRAS family transcription factor containing protein, expressed
LOC_Os11g04580OsAffx.24964.1.S1_s_at11/1111+1939369..1940190hypothetical protein
LOC_Os11g04580OsAffx.24964.1.S1_x_at11/1111+1939369..1940190hypothetical protein
LOC_Os11g04580OsAffx.24964.2.S1_s_at7/1111+1939369..1940190hypothetical protein
LOC_Os11g04580OsAffx.24964.2.S1_x_at3/1111+1939369..1940190hypothetical protein
LOC_Os11g04590OsAffx.19487.1.S1_x_at11/1111+1941620..1943002GRAS family transcription factor containing protein
LOC_Os11g04600Os.49532.1.S1_s_at4/1111+1950555..1953193ankyrin repeat family protein, putative, expressed
LOC_Os11g04610NANA11+1959939..1960652retrotransposon, putative, centromere-specific
LOC_Os11g04620NANA11+1962165..1964246retrotransposon, putative, centromere-specific
LOC_Os11g04630OsAffx.30818.1.S1_at11/1111+1969409..1970622hypothetical protein
LOC_Os11g04640OsAffx.19542.3.S1_x_at3/1111+1973199..1977421retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009408biological_processresponse to heat
GO:0009617biological_processresponse to bacteria
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009625biological_processresponse to insect
GO:0009627biological_processsystemic acquired resistance
GO:0009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009954biological_processproximal/distal pattern formation
GO:0010022biological_processmeristem determinacy
GO:0010227biological_processfloral organ abscission
GO:0048439biological_processflower morphogenesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49532.1.S1_s_at--748--9672Chr12:1870762..1870786 (25 bp)
TCACCTCCGAGTTCCTCTTCAAGGG
LOC_Os12g04410
Os.49532.1.S1_s_at--160--1832Chr12:1870942..1870966 (25 bp)
ACGCCGACGACAGCTTGGTGAGCCT
LOC_Os12g04410
Os.49532.1.S1_s_at--411--5792Chr12:1870947..1870971 (25 bp)
GACGACAGCTTGGTGAGCCTGACGA
LOC_Os12g04410
Os.49532.1.S1_s_at--345--1552Chr12:1870953..1870977 (25 bp)
AGCTTGGTGAGCCTGACGATGAACT
LOC_Os12g04410
Os.49532.1.S1_s_at--745--9752Chr12:1871101..1871125 (25 bp)
TAATATTATTCCCTATCCTTCTCTT
NONE
Os.49532.1.S1_s_at--95--10152Chr12:1871114..1871138 (25 bp)
TATCCTTCTCTTCTACTAGCCGTGT
NONE
Os.49532.1.S1_s_at--295--10592Chr12:1871119..1871143 (25 bp)
TTCTCTTCTACTAGCCGTGTTGAGA
NONE
Os.49532.1.S1_s_at--567--10572Chr12:1871124..1871148 (25 bp)
TTCTACTAGCCGTGTTGAGATTTGT
NONE
Os.49532.1.S1_s_at--53--5012Chr12:1871157..1871181 (25 bp)
GCATGGTTGACAAGATGAGCAGCAA
NONE
Os.49532.1.S1_s_at--306--5052Chr12:1871175..1871199 (25 bp)
GCAGCAAATGGTGTAGCTAGCTACT
NONE
Os.49532.1.S1_s_at--620--7752Chr12:1871184..1871208 (25 bp)
GGTGTAGCTAGCTACTATATAGCTA
NONE
Target Sequence 
TCACCTCCGAGTTCCTCTTCAAGGGCGCCGTGCCGGGGCTGACGCACATCGAGCCCAACAAGCTCAGGCTCTGCCTCGAG
CTCGTGCAGTCGGCGGTGATGGTGACCACGCGCGACGACGGTGCGCCTGTCACCGGAGGCGAGGCCGGCGGAAGCGACGG
CGGCAACTTCCCGCGGAGCGACGCCGACGACAGCTTGGTGAGCCTGACGATGAACTCGACGCTAATGTACCAGGGCCAGG
AAATGGCGGCGGCCGTGGCCGCCGGCGAGGGGAGGAAAAGCAACAACGGCCGAGGGAGCCCGCCGCCCGCCATGTACTTC
CCCAATGGCTTCGCATAAGTAATATTATTCCCTATCCTTCTCTTCTACTAGCCGTGTTGAGATTTGTGGGGTTATGCATG
GTTGACAAGATGAGCAGCAAATGGTGTAGCTAGCTACTATATAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49532.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis