Browse Element(s) Details


OsAffx.30818.1.S1_at

Description tigr:9639.m00375
TID=OsAffx.30818.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0463011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04600Os.49532.1.S1_s_at4/1111+1950555..1953193ankyrin repeat family protein, putative, expressed
LOC_Os11g04610NANA11+1959939..1960652retrotransposon, putative, centromere-specific
LOC_Os11g04620NANA11+1962165..1964246retrotransposon, putative, centromere-specific
LOC_Os11g04630OsAffx.30818.1.S1_at11/1111+1969409..1970622hypothetical protein
LOC_Os11g04640OsAffx.19542.3.S1_x_at3/1111+1973199..1977421retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g04650NANA11+1980525..1981824hypothetical protein
LOC_Os11g04660Os.5263.1.S1_at11/1111+1982386..1984083Strictosidine synthase family protein
LOC_Os11g04660Os.5263.1.S1_x_at10/1111+1982386..1984083Strictosidine synthase family protein
LOC_Os11g04660Os.5263.2.S1_x_at6/1111+1982386..1984083Strictosidine synthase family protein
LOC_Os11g04670Os.11248.1.S1_at10/1111+1985059..19909422-isopropylmalate synthase B, putative, expressed
LOC_Os11g04680OsAffx.19490.1.S1_at11/1111+1991285..1993060Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g04680OsAffx.19490.2.S1_at1/1111+1991285..1993060Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g04690OsAffx.18669.1.S1_at11/1111+1994648..1995343Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30818.1.S1_at--1090--8071Chr11:1970476..1970500 (25 bp)
GGAGCTTCTGATTCTCGGAGAAGTT
LOC_Os11g04630
OsAffx.30818.1.S1_at--643--111Chr11:1970486..1970510 (25 bp)
ATTCTCGGAGAAGTTGCAGCGGCTG
LOC_Os11g04630
OsAffx.30818.1.S1_at--926--8511Chr11:1970509..1970533 (25 bp)
TGGAAGCTCTCCCAAATAGACCCAA
LOC_Os11g04630
OsAffx.30818.1.S1_at--62--2691Chr11:1970512..1970536 (25 bp)
AAGCTCTCCCAAATAGACCCAAAGA
LOC_Os11g04630
OsAffx.30818.1.S1_at--992--3091Chr11:1970523..1970547 (25 bp)
AATAGACCCAAAGATGGTGATGAAC
LOC_Os11g04630
OsAffx.30818.1.S1_at--1135--7751Chr11:1970538..1970562 (25 bp)
GGTGATGAACAGTACATCTAATGCT
LOC_Os11g04630
OsAffx.30818.1.S1_at--102--7031Chr11:1970549..1970573 (25 bp)
GTACATCTAATGCTGATCCATCTCT
LOC_Os11g04630
OsAffx.30818.1.S1_at--408--452Chr12:1878390..1878410 (21 bp)
ATCTAATGCTGATCCATCTCTTTTA
NONE
OsAffx.30818.1.S1_at--895--9112Chr12:1878392..1878416 (25 bp)
TGCTGATCCATCTCTTTTATTACTC
NONE
OsAffx.30818.1.S1_at--471--6372Chr12:1878396..1878420 (25 bp)
GATCCATCTCTTTTATTACTCATGT
NONE
OsAffx.30818.1.S1_at--1046--452Chr12:1878401..1878425 (25 bp)
ATCTCTTTTATTACTCATGTTCAGA
NONE
Target Sequence 
GGAGCTTCTGATTCTCGGAGAAGTTGCAGCGGCTGGAAGCTCTCCCAAATAGACCCAAAGATGGTGATGAACAGTACATC
TAATGCTGATCCATCTCTTTTATTACTCATGTTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30818.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis