Browse Element(s) Details


OsAffx.19490.2.S1_at

Description tigr:9640.m00361
TID=OsAffx.19490.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT004591 At1g14200
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0445011/11Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g046801/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04410Os.49532.1.S1_s_at4/1112+1868475..1871099ankyrin repeat family protein, putative, expressed
LOC_Os12g04424Os.5263.2.S1_x_at11/1112+1881576..1887256Strictosidine synthase family protein, expressed
LOC_Os12g04424Os.5263.1.S1_x_at6/1112+1881576..1887256Strictosidine synthase family protein, expressed
LOC_Os12g04424Os.5263.1.S1_at5/1112+1881576..1887256Strictosidine synthase family protein, expressed
LOC_Os12g04440Os.11248.1.S1_at11/1112+1887941..18938702-isopropylmalate synthase B, putative, expressed
LOC_Os12g04450OsAffx.19490.2.S1_at11/1112+1895033..1897476Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04450OsAffx.19490.1.S1_at2/1112+1895033..1897476Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04460OsAffx.18669.1.S1_at11/1112+1898902..1899588Zinc finger, C3HC4 type family protein
LOC_Os12g04470OsAffx.31577.1.S1_s_at11/1112+1900516..1901956hypothetical protein
LOC_Os12g04480Os.23206.1.S1_at10/1112+1905049..1908150Cytochrome P450 family protein, expressed
LOC_Os12g04490NANA12+1911221..1912258hypothetical protein
LOC_Os12g04500Os.37430.1.S1_at5/1112+1914875..1916596Two-component response regulator ARR8, putative, expressed
LOC_Os12g04510Os.9249.1.S1_at10/1112+1916846..1919667RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os12g04510Os.37965.1.S1_at1/1112+1916846..1919667RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os12g04520Os.18691.1.S1_at5/1112+1921577..1925626mitochondrial L-galactono-1,4-lactone dehydrogenase, putative

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19490.2.S1_at--985--2071Chr12:1895196..1895220 (25 bp)
ACATCCGCAACGCAAGTGTGGTCGA
LOC_Os12g04450
OsAffx.19490.2.S1_at--655--4111Chr12:1895201..1895225 (25 bp)
CGCAACGCAAGTGTGGTCGAAAACA
LOC_Os12g04450
OsAffx.19490.2.S1_at--215--4631Chr12:1895246..1895270 (25 bp)
GCGTATACTCCACACGATGGTTTGT
LOC_Os12g04450
OsAffx.19490.2.S1_at--11--331Chr12:1895250..1895274 (25 bp)
ATACTCCACACGATGGTTTGTCACC
LOC_Os12g04450
OsAffx.19490.2.S1_at--957--9211Chr12:1895254..1895278 (25 bp)
TCCACACGATGGTTTGTCACCGGAG
LOC_Os12g04450
OsAffx.19490.2.S1_at--460--2151Chr12:1895257..1895281 (25 bp)
ACACGATGGTTTGTCACCGGAGTTC
LOC_Os12g04450
OsAffx.19490.2.S1_at--472--4051Chr12:1895260..1895284 (25 bp)
CGATGGTTTGTCACCGGAGTTCGAC
LOC_Os12g04450
OsAffx.19490.2.S1_at--389--6791Chr12:1895265..1895289 (25 bp)
GTTTGTCACCGGAGTTCGACGATGA
LOC_Os12g04450
OsAffx.19490.2.S1_at--257--6552Chr12:1895306..1895330 (25 bp)
GATTATTTTGCAGCCGATGATGACG
LOC_Os12g04450
OsAffx.19490.2.S1_at--483--4331Chr12:1895379..1895403 (25 bp)
CCATCGTTAGCATGCCGGAGTTGTC
LOC_Os12g04450
OsAffx.19490.2.S1_at--714--591Chr12:1895390..1895414 (25 bp)
ATGCCGGAGTTGTCCGTCGGCGAGG
LOC_Os12g04450
Target Sequence 
ACATCCGCAACGCAAGTGTGGTCGAAAACACCGAGCCTGATGTCCTGTTCGCGTATACTCCACACGATGGTTTGTCACCG
GAGTTCGACGATGACAGCGGCGGCGTTGCTGATTATTTTGCAGCCGATGATGACGAAGCTTACAGCAACGGTGGCTTCGG
CGCGGTGCCGGCGTTGTCCGAGGCCATCGTTAGCATGCCGGAGTTGTCCGTCGGCGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19490.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis