Browse Element(s) Details


Os.18691.1.S1_at

Description gb:AK102697.1
DB_XREF= gi:32987906
TID=Os.18691.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18691 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033103H13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033103H13, full insert sequence.
FL= gb:AK102697.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0474011/11L-galactono-1,4-lactone dehydrogenase, putative, expressed
LOC_Os12g045205/11mitochondrial L-galactono-1,4-lactone dehydrogenase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04670Os.11248.1.S1_at10/1111+1985059..19909422-isopropylmalate synthase B, putative, expressed
LOC_Os11g04680OsAffx.19490.1.S1_at11/1111+1991285..1993060Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g04680OsAffx.19490.2.S1_at1/1111+1991285..1993060Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g04690OsAffx.18669.1.S1_at11/1111+1994648..1995343Zinc finger, C3HC4 type family protein
LOC_Os11g04700OsAffx.31577.1.S1_s_at11/1111+1997078..2000551expressed protein
LOC_Os11g04700OsAffx.31577.2.S1_at1/1111+1997078..2000551expressed protein
LOC_Os11g04710Os.23206.1.S1_at10/1111+2002827..2005916Cytochrome P450 family protein, expressed
LOC_Os11g04720Os.37430.1.S1_at11/1111+2009238..2011255Two-component response regulator ARR8, putative, expressed
LOC_Os11g04730Os.9249.1.S1_at9/1111+2011275..2013681RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os11g04730Os.37965.1.S1_at1/1111+2011275..2013681RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os11g04740Os.18691.1.S1_at11/1111+2015624..2020065L-galactono-1,4-lactone dehydrogenase, putative, expressed
LOC_Os11g04750OsAffx.19491.1.S1_at11/1111+2020289..2021508hypothetical protein
LOC_Os11g04760OsAffx.30819.1.S1_at10/1111+2023666..2024973hypothetical protein
LOC_Os11g04770OsAffx.19494.1.S1_at11/1111+2025739..2026179EF hand family protein
LOC_Os11g04780NANA11+2033347..2034735retrotransposon protein, putative, unclassified
LOC_Os11g04790Os.27542.1.A1_at4/1111+2040146..2040911hypothetical protein
LOC_Os11g04800OsAffx.6995.1.S1_at11/1111+2042101..2046090hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019853biological_processL-ascorbic acid biosynthesis
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18691.1.S1_at--548--112Chr12:1921982..1922006 (25 bp)
ATTCTGCATATGAACACTGGGCCAA
LOC_Os12g04520
Os.18691.1.S1_at--832--991Chr11:2016108..2016132 (25 bp)
AGGATGAACTCGCTGAACTCCAGGC
LOC_Os11g04740
Os.18691.1.S1_at--485--8152Chr12:1921674..1921698 (25 bp)
GGAAACGTTTCCCAGTAGATGCATA
LOC_Os12g04520
Os.18691.1.S1_at--282--2352Chr12:1921645..1921669 (25 bp)
AAAGCACGCATGGAGCTTGACCCTA
LOC_Os12g04520
Os.18691.1.S1_at--478--5772Chr12:1921627..1921651 (25 bp)
GACCCTAACAAGGTTCTTTCCAATG
LOC_Os12g04520
Os.18691.1.S1_at--1155--5392Chr12:1921592..1921616 (25 bp)
GAAGCTCTTCCCAGTAACAGAGGTC
LOC_Os12g04520
Os.18691.1.S1_at--1001--2232Chr12:1921488..1921512 (25 bp)
ACAATTCTGGTGGTTTCTCGTTACA
NONE
Os.18691.1.S1_at--429--10071Chr11:2015804..2015828 (25 bp)
TAGTGCTCCTCCTCTTGGATCAGTG
LOC_Os11g04740
Os.18691.1.S1_at--30--2572Chr12:1921371..1921395 (25 bp)
AACTGACGCGTTTGTTGCTGGAGGC
NONE
Os.18691.1.S1_at--235--6212Chr12:1921351..1921375 (25 bp)
GAGGCTTTTATACTTGGGAACATCC
NONE
Os.18691.1.S1_at--782--7611Chr11:2015734..2015758 (25 bp)
GGGAACATCCATGCCTATTATGAGA
LOC_Os11g04740
Target Sequence 
ATTCTGCATATGAACACTGGGCCAAAATTGAGGTTCCTAAGGATAAGGATGAACTCGCTGAACTCCAGGCTAGGTTGAGG
AAACGTTTCCCAGTAGATGCATATAACAAAGCACGCATGGAGCTTGACCCTAACAAGGTTCTTTCCAATGCAAAGTTAGA
GAAGCTCTTCCCAGTAACAGAGGTCCAACATGAAAAGTAAGGTTGTGCTGATTGTTGACATGTTTGAAGACATGTCGGGG
ATACTTAAATCAATAGCCAAAACTACAATTCTGGTGGTTTCTCGTTACATAACCGGATATGAAGAGTTAAATTCTTTGTA
GAACGTGGTCTGTTGCTGGAGAAGGGTTTTAGTGCTCCTCCTCTTGGATCAGTGCTTAGTACTGAACTGACGCGTTTGTT
GCTGGAGGCTTTTATACTTGGGAACATCCATGCCTATTATGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18691.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis