Browse Element(s) Details


Os.23206.1.S1_at

Description gb:AK060257.1
DB_XREF= gi:32970275
TID=Os.23206.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23206 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-004-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-004-E10, full insert sequence.
FL= gb:AK060257.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0471010/11Cytochrome P450 family protein, expressed
LOC_Os12g0448010/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04650NANA11+1980525..1981824hypothetical protein
LOC_Os11g04660Os.5263.1.S1_at11/1111+1982386..1984083Strictosidine synthase family protein
LOC_Os11g04660Os.5263.1.S1_x_at10/1111+1982386..1984083Strictosidine synthase family protein
LOC_Os11g04660Os.5263.2.S1_x_at6/1111+1982386..1984083Strictosidine synthase family protein
LOC_Os11g04670Os.11248.1.S1_at10/1111+1985059..19909422-isopropylmalate synthase B, putative, expressed
LOC_Os11g04680OsAffx.19490.1.S1_at11/1111+1991285..1993060Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g04680OsAffx.19490.2.S1_at1/1111+1991285..1993060Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g04690OsAffx.18669.1.S1_at11/1111+1994648..1995343Zinc finger, C3HC4 type family protein
LOC_Os11g04700OsAffx.31577.1.S1_s_at11/1111+1997078..2000551expressed protein
LOC_Os11g04700OsAffx.31577.2.S1_at1/1111+1997078..2000551expressed protein
LOC_Os11g04710Os.23206.1.S1_at10/1111+2002827..2005916Cytochrome P450 family protein, expressed
LOC_Os11g04720Os.37430.1.S1_at11/1111+2009238..2011255Two-component response regulator ARR8, putative, expressed
LOC_Os11g04730Os.9249.1.S1_at9/1111+2011275..2013681RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os11g04730Os.37965.1.S1_at1/1111+2011275..2013681RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os11g04740Os.18691.1.S1_at11/1111+2015624..2020065L-galactono-1,4-lactone dehydrogenase, putative, expressed
LOC_Os11g04750OsAffx.19491.1.S1_at11/1111+2020289..2021508hypothetical protein
LOC_Os11g04760OsAffx.30819.1.S1_at10/1111+2023666..2024973hypothetical protein
LOC_Os11g04770OsAffx.19494.1.S1_at11/1111+2025739..2026179EF hand family protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009965biological_processleaf morphogenesis
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0042814biological_processmonopolar cell growth
GO:0008395molecular_functionsteroid hydroxylase activity
GO:0010012molecular_functionsteroid 22-alpha hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23206.1.S1_at--914--72Chr12:1905784..1905808 (25 bp)
ATTCCGAGCTGTGCACCTTAATAAT
LOC_Os12g04480
Os.23206.1.S1_at--879--5172Chr12:1905748..1905772 (25 bp)
GAATGCTCGGACATTTAACCCTTGG
LOC_Os12g04480
Os.23206.1.S1_at--1022--1751Chr12:1905541..1905565 (25 bp)
ACCTCGGTTGTGTCCTGGCTATGAG
LOC_Os12g04480
Os.23206.1.S1_at--805--1532Chr12:1905518..1905542 (25 bp)
AGCTTGCCCGGGTTGTCGTTTCTAT
LOC_Os12g04480
Os.23206.1.S1_at--82--431Chr11:2003326..2003347 (22 bp)
ATCATCTTGTAACGCGCTTTAGCTG
LOC_Os11g04710
Os.23206.1.S1_at--408--2812Chr12:1905304..1905328 (25 bp)
AAGATAGACTTGTCTTCTTCCCCAC
LOC_Os12g04480
Os.23206.1.S1_at--658--992Chr12:1905264..1905288 (25 bp)
AGGATACCCTATCAATCTTCGGCTG
LOC_Os12g04480
Os.23206.1.S1_at--439--3072Chr12:1905251..1905275 (25 bp)
AATCTTCGGCTGCTTTCAGAATCAA
LOC_Os12g04480
Os.23206.1.S1_at--772--10272Chr12:1905207..1905231 (25 bp)
TTTGCAGCTGCTCTTATCTTGGAAG
LOC_Os12g04480
Os.23206.1.S1_at--51--292Chr12:1905140..1905164 (25 bp)
ATAGGTAGTGCATTTCCCTCTTTTT
LOC_Os12g04480
Os.23206.1.S1_at--967--6612Chr12:1905075..1905099 (25 bp)
GTTGTGCTGCTTGTAAAATGACCTA
LOC_Os12g04480
Target Sequence 
ATTCCGAGCTGTGCACCTTAATAATGAACACTACGAGAATGCTCGGACATTTAACCCTTGGAGATGGCAGATCAACAATA
AACTTCAGAATGCGGTAGGGGCCAATATATTTACTCCATTTGGTGGTGGACCTCGGTTGTGTCCTGGCTATGAGCTTGCC
CGGGTTGTCGTTTCTATCTTCCTCCATCATCTTGTAACGCGCTTTAGCTGGGAAGAAACCGAAGAAGATAGACTTGTCTT
CTTCCCCACCACACGAACTCTCAAAGGATACCCTATCAATCTTCGGCTGCTTTCAGAATCAATTTGCTGACGTTAGATTG
TTTTGCAGCTGCTCTTATCTTGGAAGAAAGACTAAACATAGANAAANNNNNANAAAAATAGTTCTCGCATAGGTAGTGCA
TTTCCCTCTTTTTTGNTGATCTGNAACNTGGTATGTAAACAGTANGCANCAGAGTTGTGCTGCTTGTAAAATGACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis