Browse Element(s) Details


Os.5263.1.S1_x_at

Description gb:AK067423.1
DB_XREF= gi:32977441
TID=Os.5263.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5263 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013105O10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013105O10, full insert sequence.
FL= gb:AK067423.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0466010/11Strictosidine synthase family protein
LOC_Os12g044246/11Strictosidine synthase family protein, expressed
LOC_Os08g112001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04610NANA11+1959939..1960652retrotransposon, putative, centromere-specific
LOC_Os11g04620NANA11+1962165..1964246retrotransposon, putative, centromere-specific
LOC_Os11g04630OsAffx.30818.1.S1_at11/1111+1969409..1970622hypothetical protein
LOC_Os11g04640OsAffx.19542.3.S1_x_at3/1111+1973199..1977421retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g04650NANA11+1980525..1981824hypothetical protein
LOC_Os11g04660Os.5263.1.S1_at11/1111+1982386..1984083Strictosidine synthase family protein
LOC_Os11g04660Os.5263.1.S1_x_at10/1111+1982386..1984083Strictosidine synthase family protein
LOC_Os11g04660Os.5263.2.S1_x_at6/1111+1982386..1984083Strictosidine synthase family protein
LOC_Os11g04670Os.11248.1.S1_at10/1111+1985059..19909422-isopropylmalate synthase B, putative, expressed
LOC_Os11g04680OsAffx.19490.1.S1_at11/1111+1991285..1993060Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g04680OsAffx.19490.2.S1_at1/1111+1991285..1993060Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g04690OsAffx.18669.1.S1_at11/1111+1994648..1995343Zinc finger, C3HC4 type family protein
LOC_Os11g04700OsAffx.31577.1.S1_s_at11/1111+1997078..2000551expressed protein
LOC_Os11g04700OsAffx.31577.2.S1_at1/1111+1997078..2000551expressed protein
LOC_Os11g04710Os.23206.1.S1_at10/1111+2002827..2005916Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009821biological_processalkaloid biosynthesis
GO:0016844molecular_functionstrictosidine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5263.1.S1_x_at--378--6253Chr12:1886580..1886604 (25 bp)
GATGGTTCTTATTTGCTACTTGCGG
LOC_Os12g04424
Os.5263.1.S1_x_at--660--4832Chr12:1886594..1886618 (25 bp)
GCTACTTGCGGAAACCACAACGGGT
LOC_Os12g04424
Os.5263.1.S1_x_at--278--2531Chr11:1983731..1983755 (25 bp)
AACTACCTGGGTTTCCAGACAACAT
LOC_Os11g04660
Os.5263.1.S1_x_at--214--10412Chr12:1886724..1886748 (25 bp)
TTTTGGGTTGGTCTTCATGCCAAGA
LOC_Os12g04424
Os.5263.1.S1_x_at--564--5352Chr12:1886753..1886777 (25 bp)
GAAGATCGCTGAGTGGTCAATTTCT
LOC_Os12g04424
Os.5263.1.S1_x_at--594--7831Chr11:1983821..1983845 (25 bp)
GGTCAATTTCTTATCCTTGGCTAAG
LOC_Os11g04660
Os.5263.1.S1_x_at--822--9551Chr11:1983854..1983878 (25 bp)
TCTTTAAGCTACCAGCTCAACGCAT
LOC_Os11g04660
Os.5263.1.S1_x_at--268--3312Chr12:1886834..1886858 (25 bp)
CACATCGTTCTTGACAGGATTTGGT
LOC_Os12g04424
Os.5263.1.S1_x_at--460--3471Chr11:1983902..1983926 (25 bp)
CAGGATTTGGTCGTCAAGTGATAGC
LOC_Os11g04660
Os.5263.1.S1_x_at--423--7952Chr12:1886983..1887007 (25 bp)
GGATAGGATCTGTTTTGTCACCTTT
LOC_Os12g04424
Os.5263.1.S1_x_at--754--7091NONE
GTCACCTTTTCATGGGCTTTATCGT
NONE
Target Sequence 
GATGGTTCTTATTTGCTACTTGCGGAAACCACAACGGGTAAGATCCTAAGATATTGGATTAAAACACCAAAAGCATCAAC
TATTGAAGAAGTTGCGCAACTACCTGGGTTTCCAGACAACATTAAGATGAGTCCTAGAGGAGGGTTTTGGGTTGGTCTTC
ATGCCAAGAGAGGGAAGATCGCTGAGTGGTCAATTTCTTATCCTTGGCTAAGGAAACTAATCTTTAAGCTACCAGCTCAA
CGCATTCAACGCATCACATCGTTCTTGACAGGATTTGGTCGTCAAGTGATAGCTTTGAGGTTGAGTGAGGATGGGAAGAC
CATAGAAGCAATGAGTGTTCATGGTGATGTCAGGAAGTTGTTCAAGTCTATTAGCGAAGTTGAAGAAAAGGATGGGAACC
TCTGGATAGGATCTGTTTTGTCACCTTTTCATGGGCTTTATCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5263.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis