Browse Element(s) Details


OsAffx.31577.1.S1_s_at

Description tigr:9640.m00363
TID=OsAffx.31577.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0470011/11expressed protein
LOC_Os12g0447011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04640OsAffx.19542.3.S1_x_at3/1111+1973199..1977421retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g04650NANA11+1980525..1981824hypothetical protein
LOC_Os11g04660Os.5263.1.S1_at11/1111+1982386..1984083Strictosidine synthase family protein
LOC_Os11g04660Os.5263.1.S1_x_at10/1111+1982386..1984083Strictosidine synthase family protein
LOC_Os11g04660Os.5263.2.S1_x_at6/1111+1982386..1984083Strictosidine synthase family protein
LOC_Os11g04670Os.11248.1.S1_at10/1111+1985059..19909422-isopropylmalate synthase B, putative, expressed
LOC_Os11g04680OsAffx.19490.1.S1_at11/1111+1991285..1993060Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g04680OsAffx.19490.2.S1_at1/1111+1991285..1993060Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g04690OsAffx.18669.1.S1_at11/1111+1994648..1995343Zinc finger, C3HC4 type family protein
LOC_Os11g04700OsAffx.31577.1.S1_s_at11/1111+1997078..2000551expressed protein
LOC_Os11g04700OsAffx.31577.2.S1_at1/1111+1997078..2000551expressed protein
LOC_Os11g04710Os.23206.1.S1_at10/1111+2002827..2005916Cytochrome P450 family protein, expressed
LOC_Os11g04720Os.37430.1.S1_at11/1111+2009238..2011255Two-component response regulator ARR8, putative, expressed
LOC_Os11g04730Os.9249.1.S1_at9/1111+2011275..2013681RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os11g04730Os.37965.1.S1_at1/1111+2011275..2013681RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os11g04740Os.18691.1.S1_at11/1111+2015624..2020065L-galactono-1,4-lactone dehydrogenase, putative, expressed
LOC_Os11g04750OsAffx.19491.1.S1_at11/1111+2020289..2021508hypothetical protein
LOC_Os11g04760OsAffx.30819.1.S1_at10/1111+2023666..2024973hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31577.1.S1_s_at--609--9112Chr12:1901029..1901053 (25 bp)
TGCTGATCATGTCCCCGAACCAGAA
LOC_Os12g04470
OsAffx.31577.1.S1_s_at--350--3812Chr12:1900969..1900993 (25 bp)
CTCCGCCTGGGTGGGCAGCGCGAAG
LOC_Os12g04470
OsAffx.31577.1.S1_s_at--75--1332Chr12:1900931..1900955 (25 bp)
AGAGGCGGCTGACCTGCAGCCACTC
LOC_Os12g04470
OsAffx.31577.1.S1_s_at--87--8932Chr12:1900922..1900946 (25 bp)
TGACCTGCAGCCACTCGAAGATGCA
LOC_Os12g04470
OsAffx.31577.1.S1_s_at--1098--3772Chr12:1900840..1900864 (25 bp)
CTCGAAGGCCTCCAGGCACACGGAG
LOC_Os12g04470
OsAffx.31577.1.S1_s_at--891--3932Chr12:1900745..1900769 (25 bp)
CGGAGCCGAAGCGACCGTTGCTGTA
LOC_Os12g04470
OsAffx.31577.1.S1_s_at--679--3392Chr12:1900706..1900730 (25 bp)
CAGCGGCAGCGTTAGGCCTCTGGAA
LOC_Os12g04470
OsAffx.31577.1.S1_s_at--569--7472Chr12:1900635..1900659 (25 bp)
GTGGGAGCCTGCAGCCTCCTGTACA
LOC_Os12g04470
OsAffx.31577.1.S1_s_at--1084--9032Chr12:1900626..1900650 (25 bp)
TGCAGCCTCCTGTACATGTCGTGGG
LOC_Os12g04470
OsAffx.31577.1.S1_s_at--71--3532Chr12:1900576..1900600 (25 bp)
CATGCTCCGGCGACTAGGACAAGAA
LOC_Os12g04470
OsAffx.31577.1.S1_s_at--936--3692Chr12:1900563..1900587 (25 bp)
CTAGGACAAGAATGCGCGCGACGCT
LOC_Os12g04470
Target Sequence 
TGCTGATCATGTCCCCGAACCAGAACCAGGCGTGGGCAATGGCCACAGTCCCGCCTCCGCCTCCGCCTGGGTGGGCAGCG
CGAAGCGGCAGAGCGGGCAGAGGCGGCTGACCTGCAGCCACTCGAAGATGCAGTTCTCATGGAAGGCATGGCAGCACGGC
ATCTTCCTCATCGGCTTGTCGCTCTCCTCCTCGAAGGCCTCCAGGCACACGGAGCAGTCCTTCTCCTTCGCCTCGCCGGC
CGACGTCTCCTCCAAGGCGGCGATGGCCTCGCTGCACGCCGGGACGGAGCCGAAGCGACCGTTGCTGTACCCTTCCGGTG
CGGCAGCGGCAGCGTTAGGCCTCTGGAAGTGCAGGTGGGGCGCCAAAATAAAGAGCGAGGCCGCGGCCGCTGCCGTGGGA
GCCTGCAGCCTCCTGTACATGTCGTGGGGCAGCAGCAATCGTCCGGTGGTCGCCATGCTCCGGCGACTAGGACAAGAATG
CGCGCGACGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31577.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis