Browse Element(s) Details


OsAffx.19491.1.S1_at

Description tigr:9640.m00369
TID=OsAffx.19491.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0475011/11hypothetical protein
LOC_Os12g0453011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04690OsAffx.18669.1.S1_at11/1111+1994648..1995343Zinc finger, C3HC4 type family protein
LOC_Os11g04700OsAffx.31577.1.S1_s_at11/1111+1997078..2000551expressed protein
LOC_Os11g04700OsAffx.31577.2.S1_at1/1111+1997078..2000551expressed protein
LOC_Os11g04710Os.23206.1.S1_at10/1111+2002827..2005916Cytochrome P450 family protein, expressed
LOC_Os11g04720Os.37430.1.S1_at11/1111+2009238..2011255Two-component response regulator ARR8, putative, expressed
LOC_Os11g04730Os.9249.1.S1_at9/1111+2011275..2013681RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os11g04730Os.37965.1.S1_at1/1111+2011275..2013681RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os11g04740Os.18691.1.S1_at11/1111+2015624..2020065L-galactono-1,4-lactone dehydrogenase, putative, expressed
LOC_Os11g04750OsAffx.19491.1.S1_at11/1111+2020289..2021508hypothetical protein
LOC_Os11g04760OsAffx.30819.1.S1_at10/1111+2023666..2024973hypothetical protein
LOC_Os11g04770OsAffx.19494.1.S1_at11/1111+2025739..2026179EF hand family protein
LOC_Os11g04780NANA11+2033347..2034735retrotransposon protein, putative, unclassified
LOC_Os11g04790Os.27542.1.A1_at4/1111+2040146..2040911hypothetical protein
LOC_Os11g04800OsAffx.6995.1.S1_at11/1111+2042101..2046090hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19491.1.S1_at--940--7832Chr12:1926532..1926556 (25 bp)
GGTACTTACGCTTTTCATGTGGTGA
LOC_Os12g04530
OsAffx.19491.1.S1_at--1078--2312Chr12:1926582..1926606 (25 bp)
AAAGAACCTGCCTTTTGTTGGTCAG
LOC_Os12g04530
OsAffx.19491.1.S1_at--1104--8792Chr12:1926597..1926621 (25 bp)
TGTTGGTCAGGCAGTGCACCTTGGC
LOC_Os12g04530
OsAffx.19491.1.S1_at--368--1092Chr12:1926756..1926780 (25 bp)
AGTGGACAAGATTACCTTCCCGCTC
LOC_Os12g04530
OsAffx.19491.1.S1_at--777--7592Chr12:1926798..1926822 (25 bp)
GGGCAGCTTCTGTTGCATCAGGTTG
LOC_Os12g04530
OsAffx.19491.1.S1_at--560--2412Chr12:1926849..1926873 (25 bp)
AAAAACCAACTATCGTCGCTGGCGC
LOC_Os12g04530
OsAffx.19491.1.S1_at--358--5312Chr12:1926894..1926918 (25 bp)
GAAGGAGGTCCATGTTATCTCGACT
LOC_Os12g04530
OsAffx.19491.1.S1_at--243--10152Chr12:1926909..1926933 (25 bp)
TATCTCGACTGCCTTTCGGATAGAG
LOC_Os12g04530
OsAffx.19491.1.S1_at--843--672Chr12:1926949..1926973 (25 bp)
ATGACTCATTGTCAGTCCCAGGAAT
LOC_Os12g04530
OsAffx.19491.1.S1_at--371--2912Chr12:1926982..1927006 (25 bp)
AAGGATCAGCTACTTGCACTACAAG
LOC_Os12g04530
OsAffx.19491.1.S1_at--468--3092Chr12:1927041..1927065 (25 bp)
AATACATGGTTTGCTGGGTTCTGGC
LOC_Os12g04530
Target Sequence 
GGTACTTACGCTTTTCATGTGGTGAACAAAATTTGGGAGAAGATCCATGAAAAGAACCTGCCTTTTGTTGGTCAGGCAGT
GCACCTTGGCGGCAGCCTCTTCGCCGCCTGTCCCATATCCAACACTGCCTCAACCTCAACATCTGCCTCTGTGTTCCACA
TGTCCATCAAAATCTCCTCGTCCATTCCCTCATTATCAATCCAAAAGTTCAAGGTGATGGCATCAGTGGACAAGATTACC
TTCCCGCTCTTCTGCCCCATGGGAANGGGCAGCTTCTGTTGCATCAGGTTGGGGCCATCTCGTCTCCGGCACAGACGAAA
AACCAACTATCGTCGCTGGCGCAGCCCAAAAACCAGCTGCTTGAAGGAGGTCCATGTTATCTCGACTGCCTTTCGGATAG
AGAACATTGAAGCTATCATGACTCATTGTCAGTCCCAGGAATCTAAGGCTAAGGATCAGCTACTTGCACTACAAGTGAAG
GAACAGATGCATTCATGCGAATCCAAGGAAATACATGGTTTGCTGGGTTCTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19491.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis