Browse Element(s) Details


OsAffx.6995.1.S1_at

Description tigr:9639.m00394
TID=OsAffx.6995.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0480011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04740Os.18691.1.S1_at11/1111+2015624..2020065L-galactono-1,4-lactone dehydrogenase, putative, expressed
LOC_Os11g04750OsAffx.19491.1.S1_at11/1111+2020289..2021508hypothetical protein
LOC_Os11g04760OsAffx.30819.1.S1_at10/1111+2023666..2024973hypothetical protein
LOC_Os11g04770OsAffx.19494.1.S1_at11/1111+2025739..2026179EF hand family protein
LOC_Os11g04780NANA11+2033347..2034735retrotransposon protein, putative, unclassified
LOC_Os11g04790Os.27542.1.A1_at4/1111+2040146..2040911hypothetical protein
LOC_Os11g04800OsAffx.6995.1.S1_at11/1111+2042101..2046090hypothetical protein
LOC_Os11g04810NANA11+2047396..2047785hypothetical protein
LOC_Os11g04820NANA11+2050147..2050502EF hand family protein
LOC_Os11g04830Os.50379.1.S1_at10/1111+2052139..2055052expressed protein
LOC_Os11g04840Os.24619.1.S1_at10/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04840Os.24619.2.S1_x_at2/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04840Os.24619.1.S2_at2/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04840OsAffx.6997.1.S1_x_at1/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04850NANA11+2061621..2062391DTW domain containing protein
LOC_Os11g04860Os.55208.1.S1_at11/1111+2063724..2065286Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os11g04870NANA11+2068920..2069681hypothetical protein
LOC_Os11g04880Os.38470.1.S1_at11/1111+2070436..2073045Ubiquitin-like protein 5, putative, expressed
LOC_Os11g04880Os.38470.1.S1_x_at11/1111+2070436..2073045Ubiquitin-like protein 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6995.1.S1_at--1019--5571Chr11:2044600..2044624 (25 bp)
GAAATCTTTCTCAAGTCGGACATCG
LOC_Os11g04800
OsAffx.6995.1.S1_at--807--3951Chr11:2044584..2044608 (25 bp)
CGGACATCGTCTTCCACATGGATAA
LOC_Os11g04800
OsAffx.6995.1.S1_at--910--7951Chr11:2044565..2044589 (25 bp)
GGATAAGTATTCTTGGAGCTCCTAT
LOC_Os11g04800
OsAffx.6995.1.S1_at--1091--8071Chr11:2044551..2044575 (25 bp)
GGAGCTCCTATGCTTCGAGAAGTAT
LOC_Os11g04800
OsAffx.6995.1.S1_at--1058--7551Chr11:2044350..2044374 (25 bp)
GGGCCATGTGCCTATTACAAGTCTT
LOC_Os11g04800
OsAffx.6995.1.S1_at--245--2751Chr11:2044080..2044104 (25 bp)
AAGACATAGCTTGCCTAAAGTCACA
LOC_Os11g04800
OsAffx.6995.1.S1_at--1000--2831Chr11:2044063..2044087 (25 bp)
AAGTCACATCTACAAGTTCTCAAGT
LOC_Os11g04800
OsAffx.6995.1.S1_at--696--3851Chr11:2044014..2044038 (25 bp)
CTGAAATTGCTATTGCTTCCGCGGT
LOC_Os11g04800
OsAffx.6995.1.S1_at--398--71Chr11:2044003..2044027 (25 bp)
ATTGCTTCCGCGGTGCTAGAACATG
LOC_Os11g04800
OsAffx.6995.1.S1_at--843--611Chr11:2043936..2043960 (25 bp)
ATGCGGATGACATACTCTCTCAAGC
LOC_Os11g04800
OsAffx.6995.1.S1_at--173--6011Chr11:2043889..2043913 (25 bp)
GAGAGGTTATCACCAAACGCTAGGA
LOC_Os11g04800
Target Sequence 
GAAATCTTTCTCAAGTCGGACATCGTCTTCCACATGGATAAGTATTCTTGGAGCTCCTATGCTTCGAGAAGTATGGTTCA
ACTTGTCAAGTCAGACTAGAAGCATCGACAATGTTTACTTAGATGTGGGCCATGTGCCTATTACAAGTCTTAGAAAACTT
GAGCTGAGTATTGCTTTCAAAGAGAGAAAGGGCAGACATGCATTGTTGAATTTCTTCAGATCTTGTACAGAACTGAAAGA
ACTTGTCCTTTGGAGAGAAGATAAGGTATACTTTGAGGAGGAATGTGACGTTCATTCTGATGATTGGTCATCTGCATTGA
AAGACATAGCTTGCCTAAAGTCACATCTACAAGTTCTCAAGTTGTTTGACTATGGTGGAGGCGAAACTGAAATTGCTATT
GCTTCCGCGGTGCTAGAACATGGGGCTTCCATAGAAAATCTTACCATTATGTCTACAACAAGTAATGCGGATGACATACT
CTCTCAAGCAAAACAGAAGCTTGAGAAGGTTGAGAGGTTATCACCAAACGCTAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis