Browse Element(s) Details


Os.50379.1.S1_at

Description gb:AK120954.1
DB_XREF= gi:37990577
TID=Os.50379.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50379 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039E10, full insert sequence.
FL= gb:AK120954.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0483010/11expressed protein
LOC_Os12g046902/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04780NANA11+2033347..2034735retrotransposon protein, putative, unclassified
LOC_Os11g04790Os.27542.1.A1_at4/1111+2040146..2040911hypothetical protein
LOC_Os11g04800OsAffx.6995.1.S1_at11/1111+2042101..2046090hypothetical protein
LOC_Os11g04810NANA11+2047396..2047785hypothetical protein
LOC_Os11g04820NANA11+2050147..2050502EF hand family protein
LOC_Os11g04830Os.50379.1.S1_at10/1111+2052139..2055052expressed protein
LOC_Os11g04840Os.24619.1.S1_at10/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04840Os.24619.2.S1_x_at2/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04840Os.24619.1.S2_at2/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04840OsAffx.6997.1.S1_x_at1/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04850NANA11+2061621..2062391DTW domain containing protein
LOC_Os11g04860Os.55208.1.S1_at11/1111+2063724..2065286Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os11g04870NANA11+2068920..2069681hypothetical protein
LOC_Os11g04880Os.38470.1.S1_at11/1111+2070436..2073045Ubiquitin-like protein 5, putative, expressed
LOC_Os11g04880Os.38470.1.S1_x_at11/1111+2070436..2073045Ubiquitin-like protein 5, putative, expressed
LOC_Os11g04890OsAffx.18676.1.S1_at11/1111+2073422..2075729expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50379.1.S1_at--210--2371Chr11:2054466..2054490 (25 bp)
AAACCGAGCACATCGTTGGTGACCC
LOC_Os11g04830
Os.50379.1.S1_at--199--8932Chr12:1987617..1987641 (25 bp)
TGACCAACTATGCACGTCGCTACAA
LOC_Os12g04690
Os.50379.1.S1_at--722--9632Chr12:1987671..1987695 (25 bp)
TCATGGCGTCGCTGGTGATAATGGT
LOC_Os12g04690
Os.50379.1.S1_at--232--5791NONE
GACGACGTCAGCTTACATCTTGGCA
NONE
Os.50379.1.S1_at--539--9451Chr11:2054738..2054762 (25 bp)
TCGGCGTACATCGTTGTTCTTGTGG
LOC_Os11g04830
Os.50379.1.S1_at--707--3331Chr11:2054828..2054852 (25 bp)
CACTGCTTCTCCTTCGAAGATTTGT
LOC_Os11g04830
Os.50379.1.S1_at--591--10811Chr11:2054849..2054873 (25 bp)
TTGTAGAGCCTAAGCCTGACTCCAT
LOC_Os11g04830
Os.50379.1.S1_at--706--431Chr11:2054891..2054915 (25 bp)
ATCTTCCATTCTTCCCAGATGGATG
LOC_Os11g04830
Os.50379.1.S1_at--946--7751Chr11:2054915..2054939 (25 bp)
GGTGATCCTCTCTGTACAGTCACAA
LOC_Os11g04830
Os.50379.1.S1_at--571--9872Chr12:1988019..1988042 (24 bp)
TACAGTCACAACTCTGCCTGCAGAG
NONE
Os.50379.1.S1_at--356--9011Chr11:2055028..2055052 (25 bp)
TGAATTGTTGACAGCTTCCAGTTGC
LOC_Os11g04830
Target Sequence 
AAACCGAGCACATCGTTGGTGACCCTGTCCTCCTGACCAACTATGCACGTCGCTACAAGGCCTTCTTCTACTGCAACGCG
ACGTCGTTCATGGCGTCGCTGGTGATAATGGTGTTGCTGCTGATCAAGAGGGTGAGCAACACCCAGCCGGCGCTCCTGGC
GCTGCACGCCGCCATGATACTGGACCTGTTCGGCCTCATGGGCGCGTACGCCGCCGAGAGCTGCAGGAGGGTGACGACGT
CAGCTTACATCTTGGCACTGCTCGTCGGGGTTTCGGCGTACATCGTTGTTCTTGTGGTGGTGTCCATTGGTGTGGCGAGA
TGGATGAAGAAGGTGATGGACAAGGTGGGGGAGAAGCTCACACACTGCTTCTCCTTCGAAGATTTGTAGAGCCTAAGCCT
GACTCCATGGCCCCTGATATGGGGCATCTTCCATTCTTCCCAGATGGATGGTGATCCTCTCTGTACAGTCACAACTCTGC
CTGCAGAGAGAGGGGTTTTTCCTAGGATTTGTAGGAATTTCTAGTTTAGTTGTTTTCTTTTCTGTACATTGTTGTTTGTT
TTTGAATTGTTGACAGCTTCCAGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis