Browse Element(s) Details


Os.24619.1.S2_at

Description gb:AK102875.1
DB_XREF= gi:32988084
TID=Os.24619.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24619 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-129-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112C21, full insert sequence.
FL= gb:AK102875.1 gb:AK100364.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0470011/11Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g048402/11Phosphatidylinositol-4-phosphate 5-kinase 4, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04640OsAffx.7485.1.S1_x_at11/1112+1965078..1966645major facilitator superfamily protein
LOC_Os12g04640Os.35004.1.S1_x_at2/1112+1965078..1966645major facilitator superfamily protein
LOC_Os12g04640Os.47306.1.S1_x_at1/1112+1965078..1966645major facilitator superfamily protein
LOC_Os12g04650Os.14655.1.S1_x_at11/1112+1968713..1970628Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04650Os.14655.2.S1_at9/1112+1968713..1970628Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04660OsAffx.31580.1.S1_x_at1/1112+1972804..1973670Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04670OsAffx.22940.2.S1_s_at11/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.22940.5.S1_x_at11/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.22940.1.S1_s_at11/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.22940.5.S1_at11/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.22940.3.S1_x_at9/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.22940.2.S1_at9/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670Os.35344.3.S1_x_at6/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670Os.35344.18.S1_x_at3/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.31552.2.S1_at1/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04680NANA12+1982960..1983384EF hand family protein
LOC_Os12g04690Os.50379.1.S1_at2/1112+1985268..1987972expressed protein
LOC_Os12g04700Os.24619.1.S2_at11/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os12g04700Os.24619.1.S1_at11/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os12g04700Os.24619.2.S1_x_at2/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os12g04700OsAffx.6997.1.S1_x_at1/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os12g04710OsAffx.31581.1.S1_at11/1112+1996968..1997309hypothetical protein
LOC_Os12g04720Os.18466.1.S1_at11/1112+2009208..2010802expressed protein
LOC_Os12g04740Os.50782.1.S1_a_at11/1112+2011852..2015391expressed protein
LOC_Os12g04740Os.57104.1.S1_at11/1112+2011852..2015391expressed protein
LOC_Os12g04750Os.17839.1.A1_at11/1112+2016495..2021865expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24619.1.S2_at--751--1471Chr12:1989221..1989245 (25 bp)
AGAATCCTGAAAGCGAATCCCAGCT
LOC_Os12g04700
Os.24619.1.S2_at--776--5231Chr12:1989207..1989231 (25 bp)
GAATCCCAGCTCATTGGCGAACCAA
LOC_Os12g04700
Os.24619.1.S2_at--605--8112Chr12:1989169..1989193 (25 bp)
GGACGTTATCCTGTTCTTTGGAATC
LOC_Os12g04700
Os.24619.1.S2_at--25--552Chr12:1989077..1989101 (25 bp)
ATCCCAACTCCATATCGGCTGTTGA
LOC_Os12g04700
Os.24619.1.S2_at--324--3471Chr12:1989028..1989052 (25 bp)
CAGGGACTTCATTTACAGGGCTTTT
LOC_Os12g04700
Os.24619.1.S2_at--1094--7611Chr12:1988968..1988992 (25 bp)
GGGAACACTCTTAACTCTTAACTCA
LOC_Os12g04700
Os.24619.1.S2_at--185--5571Chr12:1988942..1988966 (25 bp)
GAAAGCATAACGACCAGCCGATGGA
LOC_Os12g04700
Os.24619.1.S2_at--984--4511Chr12:1988824..1988848 (25 bp)
GCCCCTGGTGGGTGTATAGATTTTG
LOC_Os12g04700
Os.24619.1.S2_at--334--8752Chr12:1988801..1988825 (25 bp)
TGTACATTTCCCAAATCTTTTCATG
LOC_Os12g04700
Os.24619.1.S2_at--415--5852Chr12:1988701..1988725 (25 bp)
GACCATGTAACAGTTCTTTCATTTT
LOC_Os12g04700
Os.24619.1.S2_at--693--10332Chr12:1988673..1988697 (25 bp)
TTTACTTATTTCCTCTTGTAGCAAA
LOC_Os12g04700
Target Sequence 
AGAATCCTGAAAGCGAATCCCAGCTCATTGGCGAACCAACAGGGGAATTCCAGGACGTTATCCTGTTCTTTGGAATCATT
GATATCCTACAAGACTATGATNTCAGCAAGAAGNNTGAGCNTGNCTNCAAATCCATGCAATNNGATCCCAACTCCATATC
GGCTGTTGATCCAAAGCAATACTGCAAAAGGTTCAGGGACTTCATTTACAGGGCTTTTAGTGAAGACGTACAGTAAATAC
GTCATTAACAAAAGGGAACACTCTTAACTCTTAACTCAAGAAAGCATAACGACCAGCCGATGGATGTTTTTTTTGGCCAT
TCCAGGACTATTTTGTAGGTAAGATCATTCATTCATTATGTTGTAGATGGCAATACGTAATTAGTCTGACGGTTTNTGCC
CCTGGTGGGTGTATAGATTTTGTACATTTCCCAAATCTTTTCATGTGTAATTACTAATTAGAAGTAGTGTACTTGTACTC
ATGTCAATTGACATGAAAAGGATGTAGGACAGAAATTGTTGACCATGTAACAGTTCTTTCATTTTTGNTTTACTTATTTC
CTCTTGTAGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24619.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis