Browse Element(s) Details


Os.50782.1.S1_a_at

Description gb:AK106134.1
DB_XREF= gi:32991343
TID=Os.50782.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50782 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-G02, full insert sequence.
FL= gb:AK058539.1 gb:AK106134.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0474011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04690Os.50379.1.S1_at2/1112+1985268..1987972expressed protein
LOC_Os12g04700Os.24619.1.S2_at11/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os12g04700Os.24619.1.S1_at11/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os12g04700Os.24619.2.S1_x_at2/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os12g04700OsAffx.6997.1.S1_x_at1/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os12g04710OsAffx.31581.1.S1_at11/1112+1996968..1997309hypothetical protein
LOC_Os12g04720Os.18466.1.S1_at11/1112+2009208..2010802expressed protein
LOC_Os12g04740Os.50782.1.S1_a_at11/1112+2011852..2015391expressed protein
LOC_Os12g04740Os.57104.1.S1_at11/1112+2011852..2015391expressed protein
LOC_Os12g04750Os.17839.1.A1_at11/1112+2016495..2021865expressed protein
LOC_Os12g04760OsAffx.31582.1.S1_at11/1112+2026019..2026433hypothetical protein
LOC_Os12g04770Os.53848.1.S1_at10/1112+2027660..2029698hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50782.1.S1_a_at--1003--10271Chr12:2012696..2012720 (25 bp)
TTTGCTTTAAACTTGGACCCCTCAG
LOC_Os12g04740
Os.50782.1.S1_a_at--461--3751Chr12:2012677..2012700 (24 bp)
CTCAGTATCTCCTGGATCAGTCATA
LOC_Os12g04740
Os.50782.1.S1_a_at--946--2751Chr12:2012434..2012458 (25 bp)
AAGACATGGCGCCTCAGGATCTGCA
LOC_Os12g04740
Os.50782.1.S1_a_at--740--4391Chr12:2012357..2012381 (25 bp)
GCCAAGTTGCGTATGCTCGATCAAG
LOC_Os12g04740
Os.50782.1.S1_a_at--170--8431Chr12:2012317..2012341 (25 bp)
GGCCTTGAAGAATTGGTTGCATCCA
LOC_Os12g04740
Os.50782.1.S1_a_at--180--1391Chr12:2012142..2012166 (25 bp)
AGACGATTGATTGGACTGGCTATGG
LOC_Os12g04740
Os.50782.1.S1_a_at--245--8131Chr12:2012102..2012126 (25 bp)
GGACTCAATGGGTGTAGACTCTATT
LOC_Os12g04740
Os.50782.1.S1_a_at--1057--5691Chr12:2012086..2012110 (25 bp)
GACTCTATTAATGTAATCGCCCATG
LOC_Os12g04740
Os.50782.1.S1_a_at--937--51Chr12:2012045..2012069 (25 bp)
ATTGATGTCCTCTTTCCATGGGAAT
LOC_Os12g04740
Os.50782.1.S1_a_at--542--431Chr12:2011964..2011988 (25 bp)
ATCTTGTTCTTTTCAGCTGATGGAC
LOC_Os12g04740
Os.50782.1.S1_a_at--809--5631Chr12:2011942..2011966 (25 bp)
GACAGCTTACGGATAGTTATTGCAT
LOC_Os12g04740
Target Sequence 
TTTGCTTTAAACTTGGACCCCTCAGTATCTCCTGGATCAGTCATAAGNCCGGCAAACCAAAATGGAATGATGGGCAGCCA
GGATGTTGTNTACAGTNCCGCTGCAAGACATGGCGCCTCAGGATCTGCAGTGATGTTTGATGATAAAGTTATTGGAGTAC
TATATTCAATGTNTACAAATAGCCAAGTTGCGTATGCTCGATCAAGTACTNCTGTTCACATGGCCTTGAAGAATTGGTTG
CATCCAAATGATGCTGCAATAACCNCTGAGAAGATGATAGAACTTGTAGTAAAACCTNTAAANGATTCAGAGTTAGACGA
TTGATTGGACTGGCTATGGATTGCAAGGGCANGTGGACTCAATGGGTGTAGACTCTATTAATGTAATCGCCCATGGTTGN
TTGTTATTTTTATTGATGTCCTCTTTCCATGGGAATATGTTGTCTATGTAATTTTTAATGTTTGAAATTATCAATAGTTA
GCTAGCTATTAGATCTTGTTCTTTTCAGCTGATGGACAGCTTACGGATAGTTATTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50782.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis