Browse Element(s) Details


OsAffx.31582.1.S1_at

Description tigr:9640.m00394
TID=OsAffx.31582.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0476011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04720Os.18466.1.S1_at11/1112+2009208..2010802expressed protein
LOC_Os12g04740Os.50782.1.S1_a_at11/1112+2011852..2015391expressed protein
LOC_Os12g04740Os.57104.1.S1_at11/1112+2011852..2015391expressed protein
LOC_Os12g04750Os.17839.1.A1_at11/1112+2016495..2021865expressed protein
LOC_Os12g04760OsAffx.31582.1.S1_at11/1112+2026019..2026433hypothetical protein
LOC_Os12g04770Os.53848.1.S1_at10/1112+2027660..2029698hypothetical protein
LOC_Os12g04790OsAffx.31583.1.S1_at11/1112+2040778..2044195expressed protein
LOC_Os12g04800OsAffx.828.1.S1_x_at1/1112+2045502..2047557retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04800OsAffx.15503.1.S1_x_at1/1112+2045502..2047557retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04810Os.27691.1.S1_x_at7/1112+2050022..2055918retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04810Os.27691.2.S1_x_at5/1112+2050022..2055918retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31582.1.S1_at--376--132Chr07:17288243..17288267 (25 bp)
ATTAGGGCCGCGTCAATTGATTTGA
NONE
OsAffx.31582.1.S1_at--690--8412Chr07:17288248..17288272 (25 bp)
GGCCGCGTCAATTGATTTGAGATCT
NONE
OsAffx.31582.1.S1_at--150--6532Chr07:17288261..17288285 (25 bp)
GATTTGAGATCTCCGGTGATCGATC
NONE
OsAffx.31582.1.S1_at--126--6033Chr07:17288266..17288290 (25 bp)
GAGATCTCCGGTGATCGATCTGGTC
NONE
OsAffx.31582.1.S1_at--875--6392Chr07:17288278..17288302 (25 bp)
GATCGATCTGGTCAATCTATCTGCA
NONE
OsAffx.31582.1.S1_at--7--6412Chr07:17288282..17288306 (25 bp)
GATCTGGTCAATCTATCTGCAGGAT
NONE
OsAffx.31582.1.S1_at--48--9493Chr07:17288297..17288321 (25 bp)
TCTGCAGGATTGGATTGTTCGCTTG
NONE
OsAffx.31582.1.S1_at--550--6613Chr07:17288304..17288328 (25 bp)
GATTGGATTGTTCGCTTGATCGCTT
NONE
OsAffx.31582.1.S1_at--821--6593Chr07:17288309..17288333 (25 bp)
GATTGTTCGCTTGATCGCTTCATCA
NONE
OsAffx.31582.1.S1_at--193--4934Chr07:17288317..17288340 (24 bp)
GCTTGATCGCTTCATCACTAGTTGT
NONE
OsAffx.31582.1.S1_at--413--6394Chr07:17288321..17288592 (25 bp)
GATCGCTTCATCACTAGTTGTGTAA
NONE
Target Sequence 
ATTAGGGCCGCGTCAATTGATTTGAGATCTCCGGTGATCGATCTGGTCAATCTATCTGCAGGATTGGATTGTTCGCTTGA
TCGCTTCATCACTAGTTGTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis