Browse Element(s) Details


Os.17839.1.A1_at

Description gb:CA999042
DB_XREF= gi:27576348
DB_XREF=S234M_D10
TID=Os.17839.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17839 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0475011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04700Os.24619.1.S2_at11/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os12g04700Os.24619.1.S1_at11/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os12g04700Os.24619.2.S1_x_at2/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os12g04700OsAffx.6997.1.S1_x_at1/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os12g04710OsAffx.31581.1.S1_at11/1112+1996968..1997309hypothetical protein
LOC_Os12g04720Os.18466.1.S1_at11/1112+2009208..2010802expressed protein
LOC_Os12g04740Os.50782.1.S1_a_at11/1112+2011852..2015391expressed protein
LOC_Os12g04740Os.57104.1.S1_at11/1112+2011852..2015391expressed protein
LOC_Os12g04750Os.17839.1.A1_at11/1112+2016495..2021865expressed protein
LOC_Os12g04760OsAffx.31582.1.S1_at11/1112+2026019..2026433hypothetical protein
LOC_Os12g04770Os.53848.1.S1_at10/1112+2027660..2029698hypothetical protein
LOC_Os12g04790OsAffx.31583.1.S1_at11/1112+2040778..2044195expressed protein
LOC_Os12g04800OsAffx.828.1.S1_x_at1/1112+2045502..2047557retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04800OsAffx.15503.1.S1_x_at1/1112+2045502..2047557retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17839.1.A1_at--489--7431Chr12:2017698..2017722 (25 bp)
GTGTAGAAGGCACCGCATTCCTATC
LOC_Os12g04750
Os.17839.1.A1_at--419--8051Chr12:2017010..2017034 (25 bp)
GGAGATGATAGTGTTCACCCTGATA
LOC_Os12g04750
Os.17839.1.A1_at--978--271Chr12:2016899..2016921 (23 bp)
ATAGATGGCCGGTTCCTATGCCGTA
LOC_Os12g04750
Os.17839.1.A1_at--17--10151Chr12:2016883..2016907 (25 bp)
TATGCCGTATTGGACTCTTCCTGAG
LOC_Os12g04750
Os.17839.1.A1_at--345--3891Chr12:2016855..2016879 (25 bp)
CTGGTCCAACGTAAACTTGCAGCTA
LOC_Os12g04750
Os.17839.1.A1_at--17--6231Chr12:2016816..2016840 (25 bp)
GAGGCCATCCTGTGTTGAATTGATC
LOC_Os12g04750
Os.17839.1.A1_at--944--10771Chr12:2016797..2016821 (25 bp)
TTGATCCCCATATCACTATCTTGTG
LOC_Os12g04750
Os.17839.1.A1_at--215--5431Chr12:2016773..2016797 (25 bp)
GAACCTGTTTAACGTCGAGAGACCT
LOC_Os12g04750
Os.17839.1.A1_at--458--7211Chr12:2016760..2016784 (25 bp)
GTCGAGAGACCTAGTTTCTAACTTT
LOC_Os12g04750
Os.17839.1.A1_at--1010--231Chr12:2016569..2016593 (25 bp)
ATATAGCCTATGGTCTTCCATGCCC
LOC_Os12g04750
Os.17839.1.A1_at--1103--10671Chr12:2016554..2016578 (25 bp)
TTCCATGCCCTTCTTGTGCTACAAA
LOC_Os12g04750
Target Sequence 
GTGTAGAAGGCACCGCATTCCTATCATGGTGTGAGATTCGCGAGATCCTGAAGTATTTTAAGACAAAAGGGGCTGTTGCT
GAACATAGCCATGGTAATCCATCTGATGTGCTTGATTGGAAGATTGCTGGAGATGATAGTGTTCACCCTGATAGATGGCC
GGTTCCTATGCCGTATTGGACTCTTCCTGAGGATCTGGTCCAACGTAAACTTGCAGCTAAAATAAGAAGACAAGAGGCCA
TCCTGTGTTGAATTGATCCCCATATCACTATCTTGTGAACCTGTTTAACGTCGAGAGACCTAGTTTCTAACTTTATCACA
ATGATTATTGTCTAGTTAGTNGTNTNGCATGTATTATAGTNGCTTGGTTTCATAAATNTATTACTAATGTTTCTGAGTAG
TNGTTTAAGTGCTCTNCCTTTTGAGCCCGACTGCCNCGANGGCCATCCGACCAGTGATGGACGTCCGAGCGTGCACTGTG
ATGGNCCATATAGCCTATGGTCTTCCATGCCCTTCTTGTGCTACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17839.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis