Browse Element(s) Details


Os.24619.1.S1_at

Description gb:AK100364.1
DB_XREF= gi:32985573
TID=Os.24619.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24619 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-129-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083N15, full insert sequence.
FL= gb:AK102875.1 gb:AK100364.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0470011/11Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g0484010/11Phosphatidylinositol-4-phosphate 5-kinase 4, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04640OsAffx.7485.1.S1_x_at11/1112+1965078..1966645major facilitator superfamily protein
LOC_Os12g04640Os.35004.1.S1_x_at2/1112+1965078..1966645major facilitator superfamily protein
LOC_Os12g04640Os.47306.1.S1_x_at1/1112+1965078..1966645major facilitator superfamily protein
LOC_Os12g04650Os.14655.1.S1_x_at11/1112+1968713..1970628Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04650Os.14655.2.S1_at9/1112+1968713..1970628Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04660OsAffx.31580.1.S1_x_at1/1112+1972804..1973670Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04670OsAffx.22940.2.S1_s_at11/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.22940.5.S1_x_at11/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.22940.1.S1_s_at11/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.22940.5.S1_at11/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.22940.3.S1_x_at9/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.22940.2.S1_at9/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670Os.35344.3.S1_x_at6/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670Os.35344.18.S1_x_at3/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.31552.2.S1_at1/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04680NANA12+1982960..1983384EF hand family protein
LOC_Os12g04690Os.50379.1.S1_at2/1112+1985268..1987972expressed protein
LOC_Os12g04700Os.24619.1.S2_at11/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os12g04700Os.24619.1.S1_at11/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os12g04700Os.24619.2.S1_x_at2/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os12g04700OsAffx.6997.1.S1_x_at1/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os12g04710OsAffx.31581.1.S1_at11/1112+1996968..1997309hypothetical protein
LOC_Os12g04720Os.18466.1.S1_at11/1112+2009208..2010802expressed protein
LOC_Os12g04740Os.50782.1.S1_a_at11/1112+2011852..2015391expressed protein
LOC_Os12g04740Os.57104.1.S1_at11/1112+2011852..2015391expressed protein
LOC_Os12g04750Os.17839.1.A1_at11/1112+2016495..2021865expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24619.1.S1_at--162--1412Chr12:1990861..1990885 (25 bp)
AGACTACATGCTCTCCATTTGCGGG
LOC_Os12g04700
Os.24619.1.S1_at--312--6172Chr12:1990637..1990661 (25 bp)
GAGGATGCTTCCAGCCTATTATAAA
LOC_Os12g04700
Os.24619.1.S1_at--626--7612Chr12:1990418..1990442 (25 bp)
GGGAATCTTTTCTGCTCCAACTATT
LOC_Os12g04700
Os.24619.1.S1_at--31--2532Chr12:1990400..1990424 (25 bp)
AACTATTCAATCCACAGACGCTTTG
LOC_Os12g04700
Os.24619.1.S1_at--787--6432Chr12:1990366..1990390 (25 bp)
GATCATCACATGGTCGCACAACGGA
LOC_Os12g04700
Os.24619.1.S1_at--989--8131Chr12:1990344..1990368 (25 bp)
GGACAAACCCCTCGATCAAATTGAT
LOC_Os12g04700
Os.24619.1.S1_at--369--5832Chr12:1990319..1990343 (25 bp)
GAGACTACCACTTTGAAGGACCTTG
LOC_Os12g04700
Os.24619.1.S1_at--979--10472Chr12:1989857..1989881 (25 bp)
TTACAGTCTTCTGGTTGGCGTTCAC
LOC_Os12g04700
Os.24619.1.S1_at--417--6612Chr12:1989844..1989868 (25 bp)
GTTGGCGTTCACTTCAAAGACCGAT
LOC_Os12g04700
Os.24619.1.S1_at--1156--5632Chr12:1989716..1989740 (25 bp)
GACAGCAGCAGTCCTGACAACGAGA
LOC_Os12g04700
Os.24619.1.S1_at--1151--5972Chr12:1989695..1989719 (25 bp)
GAGACAACTCAAACTGCTCTTGAAG
LOC_Os12g04700
Target Sequence 
AGACTACATGCTCTCCATTTGCGGGGATGATGCACTGCTGGAGNTTTCATCTCCCGGTAAAAGTGGAAGTTTCTTTTATT
TCACCAATGATGACAAGTACATGATCAAAACAATGAAGAAAGCAGAAGTTAAAGTACTTCTGAGGATGCTTCCAGCCTAT
TATAAACATGTTCGATCTTTTGATAATACTCTAGTAACAAAATTTTTTGGCCTGCATTGTGTTAAAATTACAGGAGCTAT
TCAGAAAAAGGTTCGGTTTGTTATAATGGGGAATCTTTTCTGCTCCAACTATTCAATCCACAGACGCTTTGATTTGAAAG
GATCATCACATGGTCGCACAACGGACAAACCCCTCGATCAAATTGATGAGACTACCACTTTGAAGGACCTTGATCTAAAT
TTCATTTTCCGGTTAGAGGGATCATGGTATGAAGATTTCTGCAGGCAAGTGGACAAAGATTGTGAGTTTCTGGAGCAAGA
GAGAATTATGGATTACAGTCTTCTGGTTGGCGTTCACTTCAAAGACCGATGCAAAGACAGCAGCAGTCCTGACAACGAGA
CAACTCAAACTGCTCTTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis