Browse Element(s) Details


Os.14655.1.S1_x_at

Description gb:AK111120.1
DB_XREF= gi:32996329
TID=Os.14655.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14655 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-C01, full insert sequence.
FL= gb:AK111120.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0465011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04610Os.54131.1.S1_at10/1112+1948575..1951619expressed protein
LOC_Os12g04620OsAffx.19542.3.S1_x_at5/1112+1955881..1959402retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g04630NANA12+1960915..1961335hypothetical protein
LOC_Os12g04640OsAffx.7485.1.S1_x_at11/1112+1965078..1966645major facilitator superfamily protein
LOC_Os12g04640Os.35004.1.S1_x_at2/1112+1965078..1966645major facilitator superfamily protein
LOC_Os12g04640Os.47306.1.S1_x_at1/1112+1965078..1966645major facilitator superfamily protein
LOC_Os12g04650Os.14655.1.S1_x_at11/1112+1968713..1970628Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04650Os.14655.2.S1_at9/1112+1968713..1970628Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04660OsAffx.31580.1.S1_x_at1/1112+1972804..1973670Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04670OsAffx.22940.2.S1_s_at11/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.22940.5.S1_x_at11/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.22940.1.S1_s_at11/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.22940.5.S1_at11/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.22940.3.S1_x_at9/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.22940.2.S1_at9/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670Os.35344.3.S1_x_at6/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670Os.35344.18.S1_x_at3/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.31552.2.S1_at1/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04680NANA12+1982960..1983384EF hand family protein
LOC_Os12g04690Os.50379.1.S1_at2/1112+1985268..1987972expressed protein
LOC_Os12g04700Os.24619.1.S2_at11/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os12g04700Os.24619.1.S1_at11/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os12g04700Os.24619.2.S1_x_at2/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os12g04700OsAffx.6997.1.S1_x_at1/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14655.1.S1_x_at--644--811Chr12:1969197..1969221 (25 bp)
ATGGTGACCAAGATGCACTCGCCGA
LOC_Os12g04650
Os.14655.1.S1_x_at--118--4671Chr12:1969270..1969294 (25 bp)
GCGTGTGCGGATGTCTCAGGATCAT
LOC_Os12g04650
Os.14655.1.S1_x_at--150--2551Chr12:1969355..1969379 (25 bp)
AACTCGCATGATGGTGCCTTTGGTT
LOC_Os12g04650
Os.14655.1.S1_x_at--913--811Chr12:1969406..1969430 (25 bp)
ATGGTAACTCTGCATCAGCCCAATT
LOC_Os12g04650
Os.14655.1.S1_x_at--503--3991Chr12:1969459..1969483 (25 bp)
CGTGTGCCTTGAGCCTTTCGAGGAA
LOC_Os12g04650
Os.14655.1.S1_x_at--1093--2991Chr12:1969498..1969522 (25 bp)
AATGATGCCATGTTTCCATTCCTTC
LOC_Os12g04650
Os.14655.1.S1_x_at--1088--371Chr12:1969524..1969548 (25 bp)
ATCAGCGCTGCATCTTCAGTTGGCT
LOC_Os12g04650
Os.14655.1.S1_x_at--399--4291Chr12:1969590..1969614 (25 bp)
CCTCCCAGGCTGATTTTGAGTCGGA
LOC_Os12g04650
Os.14655.1.S1_x_at--832--5451Chr12:1969628..1969652 (25 bp)
GAACGAGTTAGTGCTTCACCTGAAG
LOC_Os12g04650
Os.14655.1.S1_x_at--950--1111Chr12:1969688..1969712 (25 bp)
AGTGAGTTACTTTGCTTGTGTCCTG
LOC_Os12g04650
Os.14655.1.S1_x_at--444--1311Chr12:1969769..1969793 (25 bp)
AGATGGCAGCAATTGTCCTGCTCCA
LOC_Os12g04650
Target Sequence 
ATGGTGACCAAGATGCACTCGCCGACCGTTTCGGCGGCCAAAACGACGGCCCTGACGCCTGGTGGTCCAACCTGCGTGTG
CGGATGTCTCAGGATCATCTACTGAGGCACGAGGCGCGGAGGCGAGCCGCCACCTTGGAGGTTTTCGAGGATAGAGAAAA
CTCGCATGATGGTGCCTTTGGTTGCGGTGACCGGGCCTCTGCTAAGGCCATGGTAACTCTGCATCAGCCCAATTTGGGCG
AGACCAGGGAGCAGGATTGCGCCGTGTGCCTTGAGCCTTTCGAGGAAGGCAACACGCTTAGAATGATGCCATGTTTCCAT
TCCTTCCATCAGCGCTGCATCTTCAGTTGGCTCCGCATTAGCCGCATCTGCCCGGTGTGCCGTTTCACGCTGCCCTCCCA
GGCTGATTTTGAGTCGGAGAAGGCTGAGAAAGAACGAGTTAGTGCTTCACCTGAAGATGGCAATAACTGATTGATGAAGA
TCAATCTGCTTAGTGAGTTACTTTGCTTGTGTCCTGTCTCACAATTGAGTTGATCTTATTTATGCTTCATGGTTGATATA
TTTATCATCTAAAGATGGCAGCAATTGTCCTGCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14655.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis