Browse Element(s) Details


OsAffx.7485.1.S1_x_at

Description tigr:9640.m00381
TID=OsAffx.7485.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hexose transporter-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0464011/11major facilitator superfamily protein
LOC_Os01g386706/11Sugar carrier protein C, putative, expressed
LOC_Os07g373201/11Glucose transporter, putative, expressed
LOC_Os08g080701/11Glucose transporter, putative, expressed
LOC_Os07g015601/11Glucose transporter, putative, expressed
LOC_Os01g386801/11Glucose transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04590Os.40368.1.A1_s_at11/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04590OsAffx.31580.1.S1_x_at11/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04590Os.55645.1.S1_at4/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04610Os.54131.1.S1_at10/1112+1948575..1951619expressed protein
LOC_Os12g04620OsAffx.19542.3.S1_x_at5/1112+1955881..1959402retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g04630NANA12+1960915..1961335hypothetical protein
LOC_Os12g04640OsAffx.7485.1.S1_x_at11/1112+1965078..1966645major facilitator superfamily protein
LOC_Os12g04640Os.35004.1.S1_x_at2/1112+1965078..1966645major facilitator superfamily protein
LOC_Os12g04640Os.47306.1.S1_x_at1/1112+1965078..1966645major facilitator superfamily protein
LOC_Os12g04650Os.14655.1.S1_x_at11/1112+1968713..1970628Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04650Os.14655.2.S1_at9/1112+1968713..1970628Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04660OsAffx.31580.1.S1_x_at1/1112+1972804..1973670Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04670OsAffx.22940.2.S1_s_at11/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.22940.5.S1_x_at11/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.22940.1.S1_s_at11/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.22940.5.S1_at11/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.22940.3.S1_x_at9/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.22940.2.S1_at9/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670Os.35344.3.S1_x_at6/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670Os.35344.18.S1_x_at3/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04670OsAffx.31552.2.S1_at1/1112+1977277..1982071transposon protein, putative, Mutator sub-class
LOC_Os12g04680NANA12+1982960..1983384EF hand family protein
LOC_Os12g04690Os.50379.1.S1_at2/1112+1985268..1987972expressed protein
LOC_Os12g04700Os.24619.1.S2_at11/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os12g04700Os.24619.1.S1_at11/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os12g04700Os.24619.2.S1_x_at2/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os12g04700OsAffx.6997.1.S1_x_at1/1112+1988645..1993268Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015770biological_processsucrose transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008506molecular_functionsucrose:hydrogen symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7485.1.S1_x_at--1106--571Chr12:1965996..1966016 (21 bp)
ATCCAAATGATCTTCGCGCAGTTCG
LOC_Os12g04640
OsAffx.7485.1.S1_x_at--697--5031Chr12:1966130..1966153 (24 bp)
GCAGTTCGTTCTTGGGACGCTGATC
LOC_Os12g04640
OsAffx.7485.1.S1_x_at--601--1833Chr12:1966145..1966169 (25 bp)
ACGCTGATCGCCGTCAAGTTCGGGA
LOC_Os12g04640
OsAffx.7485.1.S1_x_at--466--3552Chr12:1966204..1966228 (25 bp)
CATCGTGGTGGTGCTGTGCATCTGC
LOC_Os12g04640
OsAffx.7485.1.S1_x_at--652--472Chr12:1966223..1966247 (25 bp)
ATCTGCGTGTTCGTGTCGGCGTTCG
LOC_Os12g04640
OsAffx.7485.1.S1_x_at--939--8471Chr12:1966271..1966295 (25 bp)
TGGCTGGTGCCCAGCGAGATCTTCC
LOC_Os12g04640
OsAffx.7485.1.S1_x_at--117--431Chr12:1966289..1966313 (25 bp)
ATCTTCCCGCTAGAGATCAGGTCGG
LOC_Os12g04640
OsAffx.7485.1.S1_x_at--344--10533Chr12:1966349..1966373 (25 bp)
TTCACCTTCATCATCGCGCAGATCT
LOC_Os12g04640
OsAffx.7485.1.S1_x_at--196--4593Chr12:1966364..1966388 (25 bp)
GCGCAGATCTTCCTGATGATGCTGT
LOC_Os12g04640
OsAffx.7485.1.S1_x_at--37--8873Chr12:1966377..1966401 (25 bp)
TGATGATGCTGTGCCACCTCAAGTT
LOC_Os12g04640
OsAffx.7485.1.S1_x_at--655--9993Chr12:1966530..1966554 (25 bp)
TAGCGGCCCTGCAGCGAGTGAGCGA
LOC_Os12g04640
Target Sequence 
ATCCAAATGATCTTCGCGCAGTTCGTTCTTGGGACGCTGATCGCCGTCAAGTTCGGGACGGCGGGCGTGGCAAACATCTC
GCGGGGTTACGCCATCGTGGTGGTGCTGTGCATCTGCGTGTTCGTGTCGGCGTTCGCGTGGTCGTGGGGGCCCCTGGGGT
GGCTGGTGCCCAGCGAGATCTTCCCGCTAGAGATCAGGTCGGCGGCGCAGAGCGTGGTGGTGATGTTCATCATGGCGTTC
ACCTTCATCATCGCGCAGATCTTCCTGATGATGCTGTGCCACCTCAAGTTCGGGCTCCCCTCCCCTTCCCCGCCGTTCCC
ATCCCCACCCTCGCCGCCGCCGCCGCCCACCTCGCCGTCTCCACGCCAACACCGCGGCTGGGCCATCTTCGCGCCCCACG
GTGGCCACGCGCGCCCGCTAGCGGCCCTGCAGCGAGTGAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7485.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis