Browse Element(s) Details


Os.54131.1.S1_at

Description gb:AK102092.1
DB_XREF= gi:32987301
TID=Os.54131.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54131 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033083A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033083A02, full insert sequence.
FL= gb:AK102092.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0461010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04520Os.18691.1.S1_at5/1112+1921577..1925626mitochondrial L-galactono-1,4-lactone dehydrogenase, putative
LOC_Os12g04530OsAffx.19491.1.S1_at11/1112+1925876..1927095hypothetical protein
LOC_Os12g04540OsAffx.30819.1.S1_at11/1112+1928974..1930164hypothetical protein
LOC_Os12g04550OsAffx.22355.1.S1_at1/1112+1931308..1932151retrotransposon protein, putative, unclassified
LOC_Os12g04560OsAffx.19494.1.S1_at5/1112+1932481..1932809Calmodulin, putative
LOC_Os12g04570OsAffx.31579.1.S1_at10/1112+1933614..1935143hypothetical protein
LOC_Os12g04570Os.52519.1.S1_at5/1112+1933614..1935143hypothetical protein
LOC_Os12g04580OsAffx.19494.1.S1_at5/1112+1936309..1936617Calmodulin-related protein 97A, putative
LOC_Os12g04590Os.40368.1.A1_s_at11/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04590OsAffx.31580.1.S1_x_at11/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04590Os.55645.1.S1_at4/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04610Os.54131.1.S1_at10/1112+1948575..1951619expressed protein
LOC_Os12g04620OsAffx.19542.3.S1_x_at5/1112+1955881..1959402retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g04630NANA12+1960915..1961335hypothetical protein
LOC_Os12g04640OsAffx.7485.1.S1_x_at11/1112+1965078..1966645major facilitator superfamily protein
LOC_Os12g04640Os.35004.1.S1_x_at2/1112+1965078..1966645major facilitator superfamily protein
LOC_Os12g04640Os.47306.1.S1_x_at1/1112+1965078..1966645major facilitator superfamily protein
LOC_Os12g04650Os.14655.1.S1_x_at11/1112+1968713..1970628Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04650Os.14655.2.S1_at9/1112+1968713..1970628Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04660OsAffx.31580.1.S1_x_at1/1112+1972804..1973670Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54131.1.S1_at--677--10771Chr12:1949584..1949608 (25 bp)
TTGAGTCGGACTTTGCATCTGCTGT
LOC_Os12g04610
Os.54131.1.S1_at--427--3551Chr12:1949569..1949593 (25 bp)
CATCTGCTGTTCTGGTGCGTGCAAA
LOC_Os12g04610
Os.54131.1.S1_at--370--8111Chr12:1949464..1949488 (25 bp)
GGACGTCACCCGATGTCAGTGTAGA
LOC_Os12g04610
Os.54131.1.S1_at--815--7351Chr12:1948826..1948850 (25 bp)
GTGAAGATGTTGACCCTGCTGCAAT
LOC_Os12g04610
Os.54131.1.S1_at--868--8171Chr12:1948786..1948810 (25 bp)
TGGAAGTTTTTTGTGTTGGGCCCTG
LOC_Os12g04610
Os.54131.1.S1_at--61--10851Chr12:1948771..1948795 (25 bp)
TTGGGCCCTGTGAAGCTGATCTGGT
LOC_Os12g04610
Os.54131.1.S1_at--636--7451Chr12:1948748..1948772 (25 bp)
GTGTCTCTTTGCTGCAGTTAGCTAG
LOC_Os12g04610
Os.54131.1.S1_at--781--10591Chr12:1948690..1948714 (25 bp)
TTCTGTTTAGTCTTCTATGGCCTGC
LOC_Os12g04610
Os.54131.1.S1_at--156--8791Chr12:1948642..1948666 (25 bp)
TGTTATTCTGTTGCTCTTTTCTTTC
LOC_Os12g04610
Os.54131.1.S1_at--1--1451Chr12:1948610..1948634 (25 bp)
AGAACCTTGTAGACTGTATCCATTT
LOC_Os12g04610
Os.54131.1.S1_at--56--2291Chr12:1948575..1948599 (25 bp)
AAATGTGGGCTATGACCCTTGATCT
NONE
Target Sequence 
TTGAGTCGGACTTTGCATCTGCTGTTCTGGTGCGTGCAAATCGCTTGAAAAGGCTTATAATTGAATCCGATAAGGAAGAT
GTCTTTAAGAAGGCTGTTGGCATACTTCAAAAGGTCAAGTGGACGTCACCCGATGTCAGTGTAGAGAGAAGACTAAATCC
ACTGGTCAGCAACTGACAGTCGAAGACAACGGAGGCAAGTCAAGAAAAATTGCCACTGGAAGCCAAGCTAATAAGGCAAG
TTGCGAATGATGTTTTCAACTCAAAGTTTGGATGGAACGCTGGAACAAGGAGGCTGGGAGCATAGAGATGTGAAGATGTT
GACCCTGCTGCAATTTGTCACCAGAATTGTGGAAGTTTTTTGTGTTGGGCCCTGTGAAGCTGATCTGGTGTCTCTTTGCT
GCAGTTAGCTAGACTTTGTTTTTTGTTTGGCAGCTCTGCTTTTCTTTCTGTTTAGTCTTCTATGGCCTGCCCTGTTTCCC
TGGAAGAAACTTATGTTATTCTGTTGCTCTTTTCTTTCTGCTGTAAGAACCTTGTAGACTGTATCCATTTCTGATAATAG
AAATGTGGGCTATGACCCTTGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis