Browse Element(s) Details


OsAffx.31579.1.S1_at

Description tigr:9640.m00373
TID=OsAffx.31579.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0457010/11hypothetical protein
LOC_Os04g224602/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04490NANA12+1911221..1912258hypothetical protein
LOC_Os12g04500Os.37430.1.S1_at5/1112+1914875..1916596Two-component response regulator ARR8, putative, expressed
LOC_Os12g04510Os.9249.1.S1_at10/1112+1916846..1919667RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os12g04510Os.37965.1.S1_at1/1112+1916846..1919667RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os12g04520Os.18691.1.S1_at5/1112+1921577..1925626mitochondrial L-galactono-1,4-lactone dehydrogenase, putative
LOC_Os12g04530OsAffx.19491.1.S1_at11/1112+1925876..1927095hypothetical protein
LOC_Os12g04540OsAffx.30819.1.S1_at11/1112+1928974..1930164hypothetical protein
LOC_Os12g04550OsAffx.22355.1.S1_at1/1112+1931308..1932151retrotransposon protein, putative, unclassified
LOC_Os12g04560OsAffx.19494.1.S1_at5/1112+1932481..1932809Calmodulin, putative
LOC_Os12g04570OsAffx.31579.1.S1_at10/1112+1933614..1935143hypothetical protein
LOC_Os12g04570Os.52519.1.S1_at5/1112+1933614..1935143hypothetical protein
LOC_Os12g04580OsAffx.19494.1.S1_at5/1112+1936309..1936617Calmodulin-related protein 97A, putative
LOC_Os12g04590Os.40368.1.A1_s_at11/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04590OsAffx.31580.1.S1_x_at11/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04590Os.55645.1.S1_at4/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04610Os.54131.1.S1_at10/1112+1948575..1951619expressed protein
LOC_Os12g04620OsAffx.19542.3.S1_x_at5/1112+1955881..1959402retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004523molecular_functionribonuclease H activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31579.1.S1_at--127--6191NONE
GAGGACGACTACATCTGGGACCAGG
NONE
OsAffx.31579.1.S1_at--55--6432Chr12:1934332..1934356 (25 bp)
GATCTAGAGATCATGAACTGTGCTA
LOC_Os12g04570
OsAffx.31579.1.S1_at--324--6632Chr12:1934396..1934420 (25 bp)
GTTGGTGGCAGGATATTCTCACAAA
LOC_Os12g04570
OsAffx.31579.1.S1_at--1147--10251Chr12:1934451..1934475 (25 bp)
TTTGAAAGTGAAACCTGGAGTCTCT
LOC_Os12g04570
OsAffx.31579.1.S1_at--714--8551Chr12:1934466..1934490 (25 bp)
TGGAGTCTCTCATTTCTGGCAAGGA
LOC_Os12g04570
OsAffx.31579.1.S1_at--83--8014Chr12:1934581..1934605 (25 bp)
GGAGGTAAACCTTTGGCTGAACAGT
LOC_Os12g04570
OsAffx.31579.1.S1_at--439--2633Chr12:1934588..1934612 (25 bp)
AACCTTTGGCTGAACAGTTCCCTGA
LOC_Os12g04570
OsAffx.31579.1.S1_at--308--1232Chr12:1934603..1934627 (25 bp)
AGTTCCCTGATCTGTATAATATTAC
LOC_Os12g04570
OsAffx.31579.1.S1_at--474--7674Chr12:1934668..1934692 (25 bp)
GGGATTGACTCTATTAAATTCAGAA
LOC_Os12g04570
OsAffx.31579.1.S1_at--159--8172Chr12:1934767..1934791 (25 bp)
GGAACCAAAGATACACTCCGGTGGA
LOC_Os12g04570
OsAffx.31579.1.S1_at--410--7352Chr12:1934818..1934842 (25 bp)
GTGAATTCCTTTTACAAAGCTCTGA
LOC_Os12g04570
Target Sequence 
GAGGACGACTACATCTGGGACCAGGGAGGTTTGGGAATTTTGGATCTAGAGATCATGAACTGTGCTATGTTGGGAAAATG
GATATGGAGGTTGGAAAATGAGAGGGGTTGGTGGCAGGATATTCTCACAAAAAAGTACTGTCACAACAAAGTTTTGTCAG
GTTTGAAAGTGAAACCTGGAGTCTCTCATTTCTGGCAAGGAATTATGGATGTGAAAGAAATGTTTTATAAATTTTGTACT
AAAGTAGTTGGCAATGGAAGGAATACTTTGTTTTGGGAAGATAATTGGATAGGAGGTAAACCTTTGGCTGAACAGTTCCC
TGATCTGTATAATATTACTTTGACAAAAAAGATTACTGTGGCAAATGTGAAACAAGGGGGGATTGACTCTATTAAATTCA
GAAGGGATGTCCTGGGGAATAAACTGAGGAATTGGCTGAAAATTAAACAATTCTGGGGTGATTTGGTTCTGGAAGATGGA
ACCAAAGATACACTCCGGTGGAGTTTGACCAAAGATGGGAAATTCACTGTGAATTCCTTTTACAAAGCTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis