Browse Element(s) Details


Os.55645.1.S1_at

Description gb:AK108475.1
DB_XREF= gi:32993684
TID=Os.55645.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.55645 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-E10, full insert sequence.
FL= gb:AK108475.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g045904/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04500Os.37430.1.S1_at5/1112+1914875..1916596Two-component response regulator ARR8, putative, expressed
LOC_Os12g04510Os.9249.1.S1_at10/1112+1916846..1919667RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os12g04510Os.37965.1.S1_at1/1112+1916846..1919667RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os12g04520Os.18691.1.S1_at5/1112+1921577..1925626mitochondrial L-galactono-1,4-lactone dehydrogenase, putative
LOC_Os12g04530OsAffx.19491.1.S1_at11/1112+1925876..1927095hypothetical protein
LOC_Os12g04540OsAffx.30819.1.S1_at11/1112+1928974..1930164hypothetical protein
LOC_Os12g04550OsAffx.22355.1.S1_at1/1112+1931308..1932151retrotransposon protein, putative, unclassified
LOC_Os12g04560OsAffx.19494.1.S1_at5/1112+1932481..1932809Calmodulin, putative
LOC_Os12g04570OsAffx.31579.1.S1_at10/1112+1933614..1935143hypothetical protein
LOC_Os12g04570Os.52519.1.S1_at5/1112+1933614..1935143hypothetical protein
LOC_Os12g04580OsAffx.19494.1.S1_at5/1112+1936309..1936617Calmodulin-related protein 97A, putative
LOC_Os12g04590Os.40368.1.A1_s_at11/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04590OsAffx.31580.1.S1_x_at11/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04590Os.55645.1.S1_at4/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04610Os.54131.1.S1_at10/1112+1948575..1951619expressed protein
LOC_Os12g04620OsAffx.19542.3.S1_x_at5/1112+1955881..1959402retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g04630NANA12+1960915..1961335hypothetical protein
LOC_Os12g04640OsAffx.7485.1.S1_x_at11/1112+1965078..1966645major facilitator superfamily protein
LOC_Os12g04640Os.35004.1.S1_x_at2/1112+1965078..1966645major facilitator superfamily protein
LOC_Os12g04640Os.47306.1.S1_x_at1/1112+1965078..1966645major facilitator superfamily protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55645.1.S1_at--577--5671Chr12:1938713..1938737 (25 bp)
GACATCGCCATGTATGAGCTGTTGG
LOC_Os12g04590
Os.55645.1.S1_at--502--7071NONE
GTAATCTTGAGCATCGATTCATCTG
NONE
Os.55645.1.S1_at--582--8911NONE
TGAGCATCGATTCATCTGTTTGCTT
NONE
Os.55645.1.S1_at--1049--10251Chr12:1938652..1938676 (25 bp)
TTTGCTTGCATGTAGTTAGCCGGCT
LOC_Os12g04590
Os.55645.1.S1_at--389--10451Chr12:1938637..1938661 (25 bp)
TTAGCCGGCTGGAAACACTTTGGAT
LOC_Os12g04590
Os.55645.1.S1_at--70--5531Chr12:1938626..1938650 (25 bp)
GAAACACTTTGGATTCGGCCGAAAG
LOC_Os12g04590
Os.55645.1.S1_at--129--5231NONE
GAATAGTTCTTTTAAGGGTTACATG
NONE
Os.55645.1.S1_at--945--7671NONE
GGGTTACATGTTTCCTGGTTTATAG
NONE
Os.55645.1.S1_at--972--731NONE
ATGTTTCCTGGTTTATAGTTGCGAT
NONE
Os.55645.1.S1_at--806--10311NONE
TTATAGTTGCGATGACCCGGGTCAG
NONE
Os.55645.1.S1_at--682--5791NONE
GACCCGGGTCAGATCGTATTGAATT
NONE
Target Sequence 
GACATCGCCATGTATGAGCTGTTGGAATATAAACATGTAATCTTGAGCATCGATTCATCTGTTTGCTTGCATGTAGTTAG
CCGGCTGGAAACACTTTGGATTCGGCCGAAAGAATAGTTCTTTTAAGGGTTACATGTTTCCTGGTTTATAGTTGCGATGA
CCCGGGTCAGATCGTATTGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55645.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis