Browse Element(s) Details


Os.38470.1.S1_x_at

Description gb:CA756493
DB_XREF= gi:25800532
DB_XREF=BR030043000_PLATE_G06_47_050.ab1
CLONE=BR030043000_PLATE_G06_47_050.ab1
TID=Os.38470.1
CNT=17
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.38470 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with strong similarity to protein pir:T47458 (A.thaliana) T47458 hypothetical protein T14D3.120 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0488011/11Ubiquitin-like protein 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04800OsAffx.6995.1.S1_at11/1111+2042101..2046090hypothetical protein
LOC_Os11g04810NANA11+2047396..2047785hypothetical protein
LOC_Os11g04820NANA11+2050147..2050502EF hand family protein
LOC_Os11g04830Os.50379.1.S1_at10/1111+2052139..2055052expressed protein
LOC_Os11g04840Os.24619.1.S1_at10/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04840Os.24619.2.S1_x_at2/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04840Os.24619.1.S2_at2/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04840OsAffx.6997.1.S1_x_at1/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04850NANA11+2061621..2062391DTW domain containing protein
LOC_Os11g04860Os.55208.1.S1_at11/1111+2063724..2065286Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os11g04870NANA11+2068920..2069681hypothetical protein
LOC_Os11g04880Os.38470.1.S1_at11/1111+2070436..2073045Ubiquitin-like protein 5, putative, expressed
LOC_Os11g04880Os.38470.1.S1_x_at11/1111+2070436..2073045Ubiquitin-like protein 5, putative, expressed
LOC_Os11g04890OsAffx.18676.1.S1_at11/1111+2073422..2075729expressed protein
LOC_Os11g04900Os.51363.1.S1_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900OsAffx.6997.1.S1_x_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900Os.24619.2.S1_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900Os.24619.2.S1_x_at10/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04910Os.53331.2.S1_x_at9/1111+2086715..2089123expressed protein
LOC_Os11g04920Os.51435.1.S1_at10/1111+2093544..2096748expressed protein
LOC_Os11g04920OsAffx.30820.1.S1_at2/1111+2093544..2096748expressed protein
LOC_Os11g04920OsAffx.27670.1.S1_at1/1111+2093544..2096748expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006512biological_processubiquitin cycle
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38470.1.S1_x_at--633--10692Chr12:2086052..2086152 (25 bp)
TTCCAACTCCAAGTCTCGCTGTGAT
NONE
Os.38470.1.S1_x_at--489--2551Chr11:2070519..2070543 (25 bp)
AACTCCAAGTCTCGCTGTGATCAGG
LOC_Os11g04880
Os.38470.1.S1_x_at--244--9211Chr11:2070522..2070546 (25 bp)
TCCAAGTCTCGCTGTGATCAGGAGC
LOC_Os11g04880
Os.38470.1.S1_x_at--200--3231Chr11:2070524..2070548 (25 bp)
CAAGTCTCGCTGTGATCAGGAGCTA
LOC_Os11g04880
Os.38470.1.S1_x_at--819--1151Chr11:2070526..2070550 (25 bp)
AGTCTCGCTGTGATCAGGAGCTAGG
LOC_Os11g04880
Os.38470.1.S1_x_at--906--9331Chr11:2070530..2070554 (25 bp)
TCGCTGTGATCAGGAGCTAGGGTTT
LOC_Os11g04880
Os.38470.1.S1_x_at--980--171Chr11:2072812..2072836 (25 bp)
ATTTAGTCATGGATGGCGAACAGAT
LOC_Os11g04880
Os.38470.1.S1_x_at--522--6231Chr11:2072823..2072847 (25 bp)
GATGGCGAACAGATTATGCCCATTT
LOC_Os11g04880
Os.38470.1.S1_x_at--1--4591Chr11:2072827..2072851 (25 bp)
GCGAACAGATTATGCCCATTTGAGC
LOC_Os11g04880
Os.38470.1.S1_x_at--24--3871Chr11:2072914..2072938 (25 bp)
CTGTTGTCAACTTTGAATATGTCGT
LOC_Os11g04880
Os.38470.1.S1_x_at--420--791Chr11:2072960..2072984 (25 bp)
ATGTGTTGTATTTGTGTTGCTGCTA
LOC_Os11g04880
Target Sequence 
TTCCAACTCCAAGTCTCGCTGTGATCAGGAGCTAGGGTTTGTGCGATCTTCGGGAGGAGGGGAAGATGATCGAGGTGGTG
CTGAACGACCGGCTGGGGAAGAAGGTGCGGGTGAAGTGCAACGAGGACGACACCATCGGCGACCTCAAGAAGCTGGTGGC
GGCGCAGACCGGGACGAGGCCCGAGAAGATCCGCATCCAGAAGTGGTACAACATCTACAAGGACCACATCACCCTCAAGG
ACTACGAGATCCACGACGGGATGGGCCTCGAGCTCTACTACAACTAGACGCCGCGCCTCTGGCTGGTATGAATTTAGTCA
TGGATGGCGAACAGATTATGCCCATTTGAGCGGCCAGCGTCCATAGCTCATANATAAAACTCTAGTGAGCTGTGTAGTTC
GTTGTGCCAATGACTGTTGTCAACTTTGAATATGTCGTTGTAGTATGATCAACCTGCAGATGTGTTGTATTTGTGTTGCT
GCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38470.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis