Browse Element(s) Details


Os.53331.2.S1_x_at

Description gb:AK072033.1
DB_XREF= gi:32982056
TID=Os.53331.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53331 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033021C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013105H20, full insert sequence.
FL= gb:AK072033.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g049109/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04850NANA11+2061621..2062391DTW domain containing protein
LOC_Os11g04860Os.55208.1.S1_at11/1111+2063724..2065286Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os11g04870NANA11+2068920..2069681hypothetical protein
LOC_Os11g04880Os.38470.1.S1_at11/1111+2070436..2073045Ubiquitin-like protein 5, putative, expressed
LOC_Os11g04880Os.38470.1.S1_x_at11/1111+2070436..2073045Ubiquitin-like protein 5, putative, expressed
LOC_Os11g04890OsAffx.18676.1.S1_at11/1111+2073422..2075729expressed protein
LOC_Os11g04900Os.51363.1.S1_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900OsAffx.6997.1.S1_x_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900Os.24619.2.S1_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900Os.24619.2.S1_x_at10/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04910Os.53331.2.S1_x_at9/1111+2086715..2089123expressed protein
LOC_Os11g04920Os.51435.1.S1_at10/1111+2093544..2096748expressed protein
LOC_Os11g04920OsAffx.30820.1.S1_at2/1111+2093544..2096748expressed protein
LOC_Os11g04920OsAffx.27670.1.S1_at1/1111+2093544..2096748expressed protein
LOC_Os11g04930Os.50597.1.S1_at11/1111+2099707..2102938SPRY domain containing protein, expressed
LOC_Os11g04940OsAffx.6998.1.S1_at11/1111+2106545..2107762Lipase family protein
LOC_Os11g04950Os.18447.1.S2_at11/1111+2108141..2114673expressed protein
LOC_Os11g04950Os.18447.1.S1_at10/1111+2108141..2114673expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53331.2.S1_x_at--706--8111Chr11:2087323..2087347 (25 bp)
GGACGATGTCCATACAGCAGCAAGA
LOC_Os11g04910
Os.53331.2.S1_x_at--236--5171Chr11:2087304..2087328 (25 bp)
GCAAGAGTTACTGCGCTGCGTGAGC
LOC_Os11g04910
Os.53331.2.S1_x_at--556--3831Chr11:2087289..2087313 (25 bp)
CTGCGTGAGCGCATGTTTAATGCTT
LOC_Os11g04910
Os.53331.2.S1_x_at--908--6191Chr11:2087114..2087138 (25 bp)
GAGGAATCTCAATCTGCTTTATCTT
LOC_Os11g04910
Os.53331.2.S1_x_at--128--451Chr11:2087094..2087118 (25 bp)
ATCTTTCACACAGTTTCCATGGTCA
LOC_Os11g04910
Os.53331.2.S1_x_at--1156--811Chr11:2087076..2087100 (25 bp)
ATGGTCAGAAACCTGTCCTGTCATC
LOC_Os11g04910
Os.53331.2.S1_x_at--510--9271Chr11:2087061..2087085 (25 bp)
TCCTGTCATCTGACGCCATTGTTAA
LOC_Os11g04910
Os.53331.2.S1_x_at--284--6611Chr11:2086906..2086930 (25 bp)
GTTGGCGCTGAACCCTCAAAATGAG
LOC_Os11g04910
Os.53331.2.S1_x_at--761--10431Chr11:2086844..2086868 (25 bp)
TTATGTGCTTGACCCCTTGCAAAAA
LOC_Os11g04910
Os.53331.2.S1_x_at--735--9731Chr11:2086712..2086736 (25 bp)
TAATCTGCATGCAAACAGCTGACAG
NONE
Os.53331.2.S1_x_at--31--3011NONE
AATGAGGCGGCTGAAGTTGGATTCC
NONE
Target Sequence 
GGACGATGTCCATACAGCAGCAAGAGTTACTGCGCTGCGTGAGCGCATGTTTAATGCTTTGGAAAACATAAACTACTTGC
TAGCTGATATTTGCTGTAAAGCGCTGAGAAATGATGTGAGTACAACAGAGTGGGACAGGTTGAGGAATCTCAATCTGCTT
TATCTTTCACACAGTTTCCATGGTCAGAAACCTGTCCTGTCATCTGACGCCATTGTTAATATGGCCTTGGTTTATCAAAA
ACAGGACAAGGGCAAGGAGGTTATGTGTTTGAAGGCAGCGTTGGCGCTGAACCCTCAAAATGAGAGAGCTGAAAGTCTTT
TGAGGTAAGTTTGTTAAGCCTTTATGTGCTTGACCCCTTGCAAAAAAATTTGAAGTGGAAGTGGGGTAATACTGTTAAGC
CTTTTGGGGTAATACTGTTCCTCAAATGGAAGTGGGACAGAGAGGCTCTCTTTTATATAAAACAAATTTTTGTTTAATCT
GCATGCAAACAGCTGACAGATTAATTCTTCAGAAATGAATGAGGCGGCTGAAGTTGGATTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53331.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis