Browse Element(s) Details


Os.18447.1.S2_at

Description gb:AK072412.1
DB_XREF= gi:32982435
TID=Os.18447.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18447 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023086C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086C01, full insert sequence.
FL= gb:AK072412.1 gb:AK065900.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0495011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04900Os.51363.1.S1_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900OsAffx.6997.1.S1_x_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900Os.24619.2.S1_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900Os.24619.2.S1_x_at10/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04910Os.53331.2.S1_x_at9/1111+2086715..2089123expressed protein
LOC_Os11g04920Os.51435.1.S1_at10/1111+2093544..2096748expressed protein
LOC_Os11g04920OsAffx.30820.1.S1_at2/1111+2093544..2096748expressed protein
LOC_Os11g04920OsAffx.27670.1.S1_at1/1111+2093544..2096748expressed protein
LOC_Os11g04930Os.50597.1.S1_at11/1111+2099707..2102938SPRY domain containing protein, expressed
LOC_Os11g04940OsAffx.6998.1.S1_at11/1111+2106545..2107762Lipase family protein
LOC_Os11g04950Os.18447.1.S2_at11/1111+2108141..2114673expressed protein
LOC_Os11g04950Os.18447.1.S1_at10/1111+2108141..2114673expressed protein
LOC_Os11g04960OsAffx.6999.1.S1_at11/1111+2120656..2122507No apical meristem protein, expressed
LOC_Os11g04970OsAffx.30821.1.S1_at11/1111+2124964..2125458hypothetical protein
LOC_Os11g04980Os.17798.1.S1_at11/1111+2127778..2137256AMP-binding enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18447.1.S2_at--681--9771Chr11:2108634..2108658 (25 bp)
TAAGGGCCGTCTTCACAGGTGGGAC
LOC_Os11g04950
Os.18447.1.S2_at--103--6131Chr11:2108594..2108618 (25 bp)
GAGTGGGCCACATACAACGACCAGA
LOC_Os11g04950
Os.18447.1.S2_at--550--6231Chr11:2108414..2108438 (25 bp)
GATGGCGGGCATTACGATGATGATA
LOC_Os11g04950
Os.18447.1.S2_at--834--5151Chr11:2108373..2108397 (25 bp)
GCAACGTGCCTGATGCTATTAGACA
LOC_Os11g04950
Os.18447.1.S2_at--621--5631Chr11:2108352..2108376 (25 bp)
GACACTTATAGTTTATCCTGCGAGA
LOC_Os11g04950
Os.18447.1.S2_at--296--9271Chr11:2108337..2108361 (25 bp)
TCCTGCGAGAGGTAAAACTGTATTT
LOC_Os11g04950
Os.18447.1.S2_at--32--9211Chr11:2108296..2108320 (25 bp)
TGCCATGAACACCTGACAGTTGTAA
LOC_Os11g04950
Os.18447.1.S2_at--669--1231Chr11:2108279..2108303 (25 bp)
AGTTGTAATGTTCTGCGTTTTGGCC
LOC_Os11g04950
Os.18447.1.S2_at--676--7991Chr11:2108232..2108256 (25 bp)
GGATGGCCATGCTTTCGAGCTGAAA
LOC_Os11g04950
Os.18447.1.S2_at--237--6971Chr11:2108195..2108219 (25 bp)
GTAGCTCATCCATTTTTATAACAGA
LOC_Os11g04950
Os.18447.1.S2_at--901--5491Chr11:2108172..2108196 (25 bp)
GAACAGCCCGTAATTTGCTTTGTTT
LOC_Os11g04950
Target Sequence 
TAAGGGCCGTCTTCACAGGTGGGACTTTGAGACAGAAGAGGAGTGGGCCACATACAACGACCAGAAGGAAGCCATGCCGA
AGGCTGCATTCCAGTTTGGGGTGAAGATGCAGGATGGCAGGAAGACGNAGGAAGCAGAACNAAGGACCAGAAGCTNCACG
AATGACCTCCACAAAATCAACNAAGATACTTGCGAGAAAGAAAGGTGACAAAGATGGAGGGNATGATGGCGGGCATTACG
ATGATGATATGCCAAGTGGGAAGAAGCAACGTGCCTGATGCTATTAGACACTTATAGTTTATCCTGCGAGAGGTAAAACT
GTATTTGTACTAGGAATTACAGTGCCATGAACACCTGACAGTTGTAATGTTCTGCGTTTTGGCCGGTGCAGAAGGGAAAA
AGAACGGGATGGCCATGCTTTCGAGCTGAAACAGTGATAATATGTAGCTCATCCATTTTTATAACAGAACAGCCCGTAAT
TTGCTTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18447.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis