Browse Element(s) Details


OsAffx.6999.1.S1_at

Description tigr:9639.m00413
TID=OsAffx.6999.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative OsNAC4 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0496011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04920Os.51435.1.S1_at10/1111+2093544..2096748expressed protein
LOC_Os11g04920OsAffx.30820.1.S1_at2/1111+2093544..2096748expressed protein
LOC_Os11g04920OsAffx.27670.1.S1_at1/1111+2093544..2096748expressed protein
LOC_Os11g04930Os.50597.1.S1_at11/1111+2099707..2102938SPRY domain containing protein, expressed
LOC_Os11g04940OsAffx.6998.1.S1_at11/1111+2106545..2107762Lipase family protein
LOC_Os11g04950Os.18447.1.S2_at11/1111+2108141..2114673expressed protein
LOC_Os11g04950Os.18447.1.S1_at10/1111+2108141..2114673expressed protein
LOC_Os11g04960OsAffx.6999.1.S1_at11/1111+2120656..2122507No apical meristem protein, expressed
LOC_Os11g04970OsAffx.30821.1.S1_at11/1111+2124964..2125458hypothetical protein
LOC_Os11g04980Os.17798.1.S1_at11/1111+2127778..2137256AMP-binding enzyme family protein, expressed
LOC_Os11g04990Os.53519.1.S1_at11/1111+2141080..2143972expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009825biological_processmultidimensional cell growth
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0009908biological_processflower development
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6999.1.S1_at--1151--9151Chr11:2121907..2121931 (25 bp)
TGCCCATTCCATGCATATGATGTTT
LOC_Os11g04960
OsAffx.6999.1.S1_at--938--6071Chr11:2121936..2121960 (25 bp)
GAGTAGATCAAGATGCACCACCATT
LOC_Os11g04960
OsAffx.6999.1.S1_at--450--1711Chr11:2121952..2121976 (25 bp)
ACCACCATTCATGCCAAGCTTAATT
LOC_Os11g04960
OsAffx.6999.1.S1_at--1119--8871Chr11:2121994..2122018 (25 bp)
TGATGGCATGCTGCAACTTCAACCA
LOC_Os11g04960
OsAffx.6999.1.S1_at--138--7411Chr11:2122083..2122107 (25 bp)
GTGATCAGTCGATGTTCACCCCATG
LOC_Os11g04960
OsAffx.6999.1.S1_at--1015--9671Chr11:2122098..2122122 (25 bp)
TCACCCCATGCTGCTGCGATAGAAA
LOC_Os11g04960
OsAffx.6999.1.S1_at--519--6211Chr11:2122193..2122217 (25 bp)
GAGGCTGATCTATACCAACAACATG
LOC_Os11g04960
OsAffx.6999.1.S1_at--930--10411Chr11:2122282..2122306 (25 bp)
TTATGCTCAGCGTCAGATTTACAAT
LOC_Os11g04960
OsAffx.6999.1.S1_at--742--911Chr11:2122336..2122360 (25 bp)
AGGGCCGGAGGATAGCGCAACTTTC
LOC_Os11g04960
OsAffx.6999.1.S1_at--57--8851Chr11:2122432..2122456 (25 bp)
TGATCAATCCATGGCAGTCGTCCCA
LOC_Os11g04960
OsAffx.6999.1.S1_at--125--7211Chr11:2122448..2122472 (25 bp)
GTCGTCCCACATGTTGCTGATCAGA
LOC_Os11g04960
Target Sequence 
TGCCCATTCCATGCATATGATGTTTGGAGGAGTAGATCAAGATGCACCACCATTCATGCCAAGCTTAATTGCTCCTTGCA
ACAACGATGATGGCATGCTGCAACTTCAACCACTCCAATTGCAGAACCCAAACCCTGCAATGCTGTACAGTAACCAGCTG
GAACCATCGTACATTGGTGATCAGTCGATGTTCACCCCATGCTGCTGCGATAGAAACTGTATTTCTTGTCGTCAGCTACA
ATTTTACCAGCAACAGCAAGCAGAGGATGGCAGTGTTGCATTTGGAGAGGCTGATCTATACCAACAACATGATAGGGCAT
TGGGAAATACTGGTGTATACCCTGACAATGTTTGGGTGGATGGTAACATGGCAGATTATGCTCAGCGTCAGATTTACAAT
GATCAAGATAATGGTGGTGTATTAATGCAAGGGCCGGAGGATAGCGCAACTTTCCCTGACAACTTCCTGATGCTGGACGA
AATGGCGGCAGGTAGCGATGATGCGTCAGGCTTTGATTATGAGGTTGATCAATCCATGGCAGTCGTCCCACATGTTGCTG
ATCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6999.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis