Browse Element(s) Details


Os.17798.1.S1_at

Description gb:AK067232.1
DB_XREF= gi:32977250
TID=Os.17798.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.17798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095N19, full insert sequence.
FL= gb:AK067232.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0498011/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04930Os.50597.1.S1_at11/1111+2099707..2102938SPRY domain containing protein, expressed
LOC_Os11g04940OsAffx.6998.1.S1_at11/1111+2106545..2107762Lipase family protein
LOC_Os11g04950Os.18447.1.S2_at11/1111+2108141..2114673expressed protein
LOC_Os11g04950Os.18447.1.S1_at10/1111+2108141..2114673expressed protein
LOC_Os11g04960OsAffx.6999.1.S1_at11/1111+2120656..2122507No apical meristem protein, expressed
LOC_Os11g04970OsAffx.30821.1.S1_at11/1111+2124964..2125458hypothetical protein
LOC_Os11g04980Os.17798.1.S1_at11/1111+2127778..2137256AMP-binding enzyme family protein, expressed
LOC_Os11g04990Os.53519.1.S1_at11/1111+2141080..2143972expressed protein
LOC_Os11g05000OsAffx.30822.1.S1_at11/1111+2150519..2153474expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0010143biological_processcutin biosynthesis
GO:0004467molecular_functionlong-chain-fatty-acid-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17798.1.S1_at--912--1251Chr11:2128172..2128196 (25 bp)
AGATATGTACGCACAACTGCGTGAA
LOC_Os11g04980
Os.17798.1.S1_at--922--2311Chr11:2128098..2128122 (25 bp)
AAAGGTTCAACCAACACAGGAGATT
LOC_Os11g04980
Os.17798.1.S1_at--52--6711Chr11:2128071..2128095 (25 bp)
GTTCGCCAATTGTATATTCAACAGG
LOC_Os11g04980
Os.17798.1.S1_at--199--3071Chr11:2128042..2128066 (25 bp)
AATAAGCGCCTTCTATTTACTGGCC
LOC_Os11g04980
Os.17798.1.S1_at--324--4171Chr11:2128036..2128060 (25 bp)
CGCCTTCTATTTACTGGCCAAGCAA
LOC_Os11g04980
Os.17798.1.S1_at--671--8451Chr11:2128021..2128045 (25 bp)
GGCCAAGCAAACAATGACAGCAGTA
LOC_Os11g04980
Os.17798.1.S1_at--922--8951Chr11:2128007..2128031 (25 bp)
TGACAGCAGTATTTCACGAGCCCTT
LOC_Os11g04980
Os.17798.1.S1_at--893--1651Chr11:2127989..2128013 (25 bp)
AGCCCTTCCATCTGACGACGAAATG
LOC_Os11g04980
Os.17798.1.S1_at--950--5011Chr11:2127892..2127916 (25 bp)
GCAGGGAACAGTGCTTGATGCATAA
LOC_Os11g04980
Os.17798.1.S1_at--654--1711Chr11:2127835..2127859 (25 bp)
ACTACTGTTTAGTGGGATATGGACT
LOC_Os11g04980
Os.17798.1.S1_at--9--8131Chr11:2127815..2127839 (25 bp)
GGACTACTCATTTGTTTGGGACAGT
LOC_Os11g04980
Target Sequence 
AGATATGTACGCACAACTGCGTGAAGCAGAATCAACAAAGTCCAAGTTGTAATTACCCGAGTAACAAACAGAATAAAGGT
TCAACCAACACAGGAGATTNAGTTCGCCAATTGTATATTCAACAGGATGAAATAAGCGCCTTCTATTTACTGGCCAAGCA
AACAATGACAGCAGTATTTCACGAGCCCTTCCATCTGACGACGAAATGAAACTTCNCCGATCAACAGCAGGGAACAGTTG
GATGTAGAGGCCGGTTTCTTAATCCATTATCTAAAAAACAGCAGGGAACAGTGCTTGATGCATAATTCATATTTGTTTCT
TATTTGAGTGAAGTAATACTACTGTTTAGTGGGATATGGACTACTCATTTGTTTGGGACAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis